PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00062g00073.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 468aa MW: 52551.2 Da PI: 6.2404 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 471.1 | 6e-144 | 47 | 465 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++lLl+cA++v+sg+le+a+ +L ++s+laspdgd+mqR+a+yf eALa r++rs+++lykal++++ s +se + ++k+f+ Peaxi162Scf00062g00073.1 47 LIHLLLACANHVASGSLENANIALDHISHLASPDGDTMQRIASYFSEALADRILRSWPGLYKALRSTKLS--VVSEDILVRKMFF 129 689*************************************************************999998..69*********** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 e +P+lk++++++NqaI ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lRiTgv++ +ke l ++++ L++ Ae Peaxi162Scf00062g00073.1 130 EFFPFLKVAFVVTNQAIIEAMEGEKMVHIVDLNAAEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLDQMAHVLTEEAE 210 ****************************************************************....9**************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll......................................... 214 +l++pf+fn+ v+++le+l++e+Lrvk+gEala+++vlqlh+ll Peaxi162Scf00062g00073.1 211 KLDIPFQFNA-VVSKLENLDVEKLRVKTGEALAISSVLQLHTLLahddekksplpfkhsngvhlqralinkntlgellekdvang 294 **********.799*********************************************************************** PP GRAS 215 .........desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 +++++++s + d++L ++++lsPkv+vv+eq+++hn+++++er++e+l+yy+alfd+le++lpr+s er k+E++ Peaxi162Scf00062g00073.1 295 yspsndtasSSPLCSTSstKMDSLLIALWGLSPKVMVVTEQDSNHNGTTLMERLSESLHYYAALFDCLESTLPRTSLERLKMENM 379 *******9844443333445789************************************************************** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 l+g+ei+n++aceg er+erhe+lekW +r++ aGF++vpls++a+ qa++ll+ ++ +gy+++e++gs+v +W+dr+L+svS+W Peaxi162Scf00062g00073.1 380 LFGEEIKNIIACEGIERKERHEKLEKWFQRFDPAGFGNVPLSYYAMLQARRLLQSYSCEGYKIKEDNGSVVVCWQDRALFSVSSW 464 ************************************************************************************* PP GRAS 374 r 374 r Peaxi162Scf00062g00073.1 465 R 465 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.339 | 21 | 445 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-141 | 47 | 465 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MIQDDGSSSV TSSSPLQIFP IMSLSPGFGS SNQWLKELKS EERGLYLIHL LLACANHVAS 60 GSLENANIAL DHISHLASPD GDTMQRIASY FSEALADRIL RSWPGLYKAL RSTKLSVVSE 120 DILVRKMFFE FFPFLKVAFV VTNQAIIEAM EGEKMVHIVD LNAAEPLQWR ALLQDLSARP 180 EGPPHLRITG VHQQKEVLDQ MAHVLTEEAE KLDIPFQFNA VVSKLENLDV EKLRVKTGEA 240 LAISSVLQLH TLLAHDDEKK SPLPFKHSNG VHLQRALINK NTLGELLEKD VANGYSPSND 300 TASSSPLCST SSTKMDSLLI ALWGLSPKVM VVTEQDSNHN GTTLMERLSE SLHYYAALFD 360 CLESTLPRTS LERLKMENML FGEEIKNIIA CEGIERKERH EKLEKWFQRF DPAGFGNVPL 420 SYYAMLQARR LLQSYSCEGY KIKEDNGSVV VCWQDRALFS VSSWRCKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-40 | 29 | 464 | 1 | 378 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015061792.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A3Q7JDZ1 | 0.0 | A0A3Q7JDZ1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g099900.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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