PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00059g00101.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 126aa MW: 14304.5 Da PI: 10.5069 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 8 | 58 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIr p gk+ r++lg+f taeeAa a++aa+++++g+ Peaxi162Scf00059g00101.1 8 HYRGVRKRP-WGRYAAEIRNP---GKKYRVWLGTFNTAEEAALAYDAAAREFRGA 58 7********.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.8E-13 | 8 | 57 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.367 | 8 | 65 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-32 | 8 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-22 | 8 | 66 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-35 | 8 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.96E-18 | 8 | 65 | No hit | No description |
PRINTS | PR00367 | 8.6E-11 | 9 | 20 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-11 | 31 | 47 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MVLVKEVHYR GVRKRPWGRY AAEIRNPGKK YRVWLGTFNT AEEAALAYDA AAREFRGAKA 60 KTNFPLPFKN PPLTATLCNP LVVKQQQPVH SDSKLSSIVD DNRCNGGVVR RRFLDFDLNF 120 APPMET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 4 | 66 | 1 | 64 | ATERF1 |
3gcc_A | 2e-22 | 4 | 66 | 1 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281207.1 | 2e-35 | ethylene-responsive transcription factor 9 | ||||
Refseq | XP_021681223.1 | 3e-35 | ethylene-responsive transcription factor 9-like | ||||
Refseq | XP_024158160.1 | 1e-34 | ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 1e-35 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | R0GP27 | 5e-34 | R0GP27_9BRAS; Uncharacterized protein | ||||
TrEMBL | S4TAK8 | 8e-34 | S4TAK8_HEVBR; AP2/ERF super family protein | ||||
STRING | XP_006281207.1 | 8e-35 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-27 | erf domain protein 9 |