PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00058g02017.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family SBP
Protein Properties Length: 969aa    MW: 108142 Da    PI: 6.0645
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00058g02017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.56e-41107184178
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                               +Cqv++C +dls+ k+yhrrhkvCe+hska+++lv++++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+qa
  Peaxi162Scf00058g02017.1 107 VCQVDDCGVDLSKGKDYHRRHKVCEMHSKATTALVANVMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNKRRRKTQA 184
                               6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-31104169IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.787105182IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-37106186IPR004333Transcription factor, SBP-box
PfamPF031102.7E-30108181IPR004333Transcription factor, SBP-box
SuperFamilySSF484037.19E-7743856IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.8E-5745857IPR020683Ankyrin repeat-containing domain
CDDcd002041.11E-5746856No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
MEGETQLYYR PMDLREVTNK NIEWDPNDWK WDAHLFIAKP NNYQQTANLA LVSSNTNTSS  60
SCSDEVNLEK RRRVLIDENG GNLSLKLFDG NTNNGKRSKV TSCNRAVCQV DDCGVDLSKG  120
KDYHRRHKVC EMHSKATTAL VANVMQRFCQ QCSRFHALEE FDEGKRSCRR RLAGHNKRRR  180
KTQADSGDNN NKTLSDGQAS GYSLMSLLKI LSNTHSNGTN HLEDQDLLSH LVRSLASQGA  240
LNGDNNLSGL LQATSKLLNN DMSPSRNSDI VSLVSNGSRG PPRPKEQHFA TLAAQMPQRS  300
SDVHHVRLDD VVTVSCQSPG TPFPIQNSSP AYAQDSESPA GRSKVINFDL NDVYVDSDDG  360
GENLERSPLP ADRGTGSLEC RSWLQQDSLQ SSPPQTSRNS DSASAHSPSS SSSDAQSRTD  420
RIVFKLFGKD PSDFPFVLRA QILDWLSHSP TEIESYIRPG CVVLTVYLRL PESAWEELFC  480
DLSSSLTRLL DVRGDSFWRK GWIYVMLQNQ IALVHDGQLL LDVPLPIETI EHTSIISVKP  540
IAVPASDRAQ FIVRGFNLTK PSTRLLCALE GDYLVAETND EAEHVDDIDK HEKLQSINLT  600
CSIPAISGRG FIEVEDHGLS NGFFPFIIAE DDVCSEIRML ESVIELTSAD YINGLTNNAD  660
LKSQAMDFIY EMGWLLHRNN VKARLGNSGP HAVLFPLKRF KWLMEFSVDR EWCAVVRKLL  720
NLLLDGTVGT EENSFLKVSL SEMGLLHKAV RRNSRPLVEL LLTYTPEGIA DELCSEYQSL  780
VGINGNFLFR PDNVGPAGLT PLHIAAGIDG CEDVLDALTD DPGMVALEAW KNTRDSTGFT  840
PEDYARLRGH YSYIHLVQRK INRKASSRHI VVDIPSILSD ENSNQKDEYA VASLEISETD  900
RRPIRPCGLC DRKLAYGSRS RTLLYRPAMF SMVALAAVCV CVALLFKSSP EVLYIFRPFR  960
WEMLDFGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-301071811084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507693.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A2K9ZXI50.0A0A2K9ZXI5_PETHY; Squamosa promoter binding-like protein 12c
STRINGXP_009773067.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18712466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]