PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00058g00263.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 577aa MW: 65589.4 Da PI: 4.9519 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 293.6 | 5e-90 | 207 | 575 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklf 84 lv+lLl++Ae v++++++la++ ++r as +g+p+qRl +yf+eAL++r+ r ++ ++++ + + +s+ ++ +l+ Peaxi162Scf00058g00263.1 207 LVHLLLAAAEEVDQQQFHLASQSIERCLWKASHSGNPIQRLCFYFAEALQERIDReTGRSTSEERKFRYQSTLALGTTPESLTCH 291 68*****************************************************666777777777777655555555555445 PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakf 168 P+ ++ +++ qa+ e v g++++H +Df+i G+Q L+qaLa +R+++ l+iT++g+ ++ke++eetg+rL +f Peaxi162Scf00058g00263.1 292 -TEIPFSQVMQFAGVQAVIENVRGAKKIHLVDFNIRSGIQCTGLMQALAeQRDHPIELLKITAIGH---QEKEKIEETGRRLLSF 372 .556*********************************************66668888*********...579************* PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 A++l++pf+f++l +++dl+ e ++vk +E++aV + l ++ +++ l++ +++++++l+P vvvv+e ea+hns+sF Peaxi162Scf00058g00263.1 373 ANSLNLPFSFDILFLLDMKDLREELINVKADETVAVYCNTVLRTMICRPAYLDN----TMRVIRRLRPSVVVVCEVEANHNSPSF 453 *************99******************************955555555....*************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 l+rf++al +y +lfd++e + r++ r+ +E + lg+ i n+va+eg+er+ r+ +l+ Wr+ + ++G+ +++lse+ qa+ Peaxi162Scf00058g00263.1 454 LNRFVDALFFYGVLFDCFEDCMDRDNPCRKRIEVFHLGEGILNIVAAEGDERFTRNVKLNVWRAFFARFGMVEMELSESSWYQAN 538 ************************************************************************************* PP GRAS 339 lllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 l+l++++ + +++++ + l+ gWk+ p+ sv+ W+ Peaxi162Scf00058g00263.1 539 LILKQFSsGSSCNLQNDGKGLLVGWKGTPIKSVTIWK 575 *******8888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.868 | 181 | 554 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-87 | 207 | 575 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MDHVSIPNID FSVLQGGHNQ LQECERNGLV NSDKIDPWFE LNSEDIDSLY SVFDLKFQEN 60 KSDKQVELLE NQQQNISDYW SHSDDSSNIG LPMQPDQIQN GIQPQVPKLG NLQGEIINPI 120 SLASLELLNN CGRLFKKSSE ENLRSALSNE ACVGNSQKMS TEEILQAAGE RYIQYSTQRV 180 DGLSMFIHPY ASALSALSID ETRDMELVHL LLAAAEEVDQ QQFHLASQSI ERCLWKASHS 240 GNPIQRLCFY FAEALQERID RETGRSTSEE RKFRYQSTLA LGTTPESLTC HTEIPFSQVM 300 QFAGVQAVIE NVRGAKKIHL VDFNIRSGIQ CTGLMQALAE QRDHPIELLK ITAIGHQEKE 360 KIEETGRRLL SFANSLNLPF SFDILFLLDM KDLREELINV KADETVAVYC NTVLRTMICR 420 PAYLDNTMRV IRRLRPSVVV VCEVEANHNS PSFLNRFVDA LFFYGVLFDC FEDCMDRDNP 480 CRKRIEVFHL GEGILNIVAA EGDERFTRNV KLNVWRAFFA RFGMVEMELS ESSWYQANLI 540 LKQFSSGSSC NLQNDGKGLL VGWKGTPIKS VTIWKFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-41 | 225 | 575 | 21 | 375 | GRAS family transcription factor containing protein, expressed |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016477658.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1S4AMK0 | 0.0 | A0A1S4AMK0_TOBAC; DELLA protein RGL1-like | ||||
STRING | XP_009616214.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 8e-51 | RGA-like 1 |