PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00058g00238.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 311aa    MW: 35388.6 Da    PI: 6.7852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00058g00238.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.6e-163077148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT +Ed +l++++ +lG g+W++ a+  g++R++k+c++rw++yl
  Peaxi162Scf00058g00238.1 30 KGPWTLDEDSILIHYISLLGQGRWDSLAQFAGLKRSGKSCRLRWLNYL 77
                              79********************************************97 PP
2Myb_DNA-binding452.5e-1484134246
                               SSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqk 46 
                               g++T++E++l++ ++ ++G++       +W++Ia++++ gRt++++k++w++
  Peaxi162Scf00058g00238.1  84 GKFTPQEQLLILLLHFRFGNRndyylcfRWAKIAEHLP-GRTDNEVKNYWRT 134
                               89************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.6222581IPR017930Myb domain
SuperFamilySSF466891.76E-2528132IPR009057Homeodomain-like
SMARTSM007178.4E-142979IPR001005SANT/Myb domain
PfamPF002494.1E-153077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-193184IPR009057Homeodomain-like
CDDcd001671.19E-103277No hitNo description
PROSITE profilePS5129410.77582140IPR017930Myb domain
SMARTSM007171.6E-1082138IPR001005SANT/Myb domain
PfamPF002491.4E-1384134IPR001005SANT/Myb domain
CDDcd001672.70E-1085134No hitNo description
Gene3DG3DSA:1.10.10.603.5E-1985138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEEVKATQVT YSSGMPVTVK LAEDNIEMRK GPWTLDEDSI LIHYISLLGQ GRWDSLAQFA  60
GLKRSGKSCR LRWLNYLRPN LRGGKFTPQE QLLILLLHFR FGNRNDYYLC FRWAKIAEHL  120
PGRTDNEVKN YWRTKVQKHA NQLHCNVNSQ EFRDVLRYQW LPSLAEQIRV TPSSSLHEYL  180
MASSSTAHNK TTEVKENISP FLETGIGSTS ITSPNVVSST NSSEAELPPL MDNSLWSFSS  240
SNWCSSFEDG YYLYSSQDQC HSWASVAGSE LVPANETLVS MGKDLASHGN ISSEDTKTSY  300
DEEVRRQCIR P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-222513822126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504485.11e-111PREDICTED: transcription factor MYB108-like
TrEMBLA0A1S4CTP61e-109A0A1S4CTP6_TOBAC; transcription factor MYB108-like
STRINGXP_009631883.11e-109(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1539336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.18e-63myb domain protein 112