PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00054g01813.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 453aa    MW: 51366.5 Da    PI: 6.2009
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00054g01813.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.21.2e-241158350
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                              i++ +nrqvt+skRrngilKK +ELSvLCd++va+i+fs++g+l  ys
  Peaxi162Scf00054g01813.1 11 IQSLTNRQVTYSKRRNGILKKVFELSVLCDVDVALIMFSPSGRLTHYS 58
                              8999*****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.749161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-24278IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-21323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-213859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.523102188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MGRSKLPLLK IQSLTNRQVT YSKRRNGILK KVFELSVLCD VDVALIMFSP SGRLTHYSRK  60
RRIEDVLSEL STLWNLRKIE IEDKFCDIER LNPAYLNTSD TTKKIQDEIN SLHCKLDEAE  120
GLLRIFEPDT RRITSLHELD LCEKRLQVAL NQVRRRMEQL SSNQISSYEG NMEQINALLQ  180
YIDNTQAENT NPSLEKPHYD LWLELEDYNY PYIPENNSTS HLYAASETSS LSQCSMNLPS  240
PTIYDAMSQT SGDTYRKEGS LTDENFKQSQ HSTRTFPALT RLQTSLTFAK SELETPTSAL  300
RPVAPYLQAE AAAAATSSQQ PPPSNNHDKV NTELDSVQPK ITTSKYQMSQ TSTSGESYLA  360
EGSFTSLTDE NFKQSQCSTR IFPAVTPLQT SFTFAKTELE TPTSALRPVA PFMQAEAAVS  420
PSQQLPYTNN EEANHELAWF QPKMKKSKYH HSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754444e-37HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755174e-37HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454543.10.0PREDICTED: agamous-like MADS-box protein AGL104 isoform X1
TrEMBLA0A1S3YQY10.0A0A1S3YQY1_TOBAC; agamous-like MADS-box protein AGL104 isoform X1
STRINGXP_009599347.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.16e-39AGAMOUS-like 104