PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00050g00512.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 424aa    MW: 47883 Da    PI: 8.5431
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00050g00512.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-1771119148
                               TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  Peaxi162Scf00050g00512.1  71 KGPWSPEEDARLKAYIEEHGTGnNWIALPQKIGLKRCGKSCRLRWLNYL 119
                               79*********************************************97 PP

2Myb_DNA-binding38.62.5e-12126168246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g +T+eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Peaxi162Scf00050g00512.1 126 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 168
                               569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0166119IPR017930Myb domain
SuperFamilySSF466897.76E-2768166IPR009057Homeodomain-like
SMARTSM007174.8E-1370121IPR001005SANT/Myb domain
PfamPF002491.3E-1571119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2572126IPR009057Homeodomain-like
CDDcd001671.30E-973119No hitNo description
PROSITE profilePS5129422.109120174IPR017930Myb domain
SMARTSM007172.3E-11124172IPR001005SANT/Myb domain
PfamPF002497.5E-11126168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-23127174IPR009057Homeodomain-like
CDDcd001676.01E-8128168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MNPRGEDFFG FQKHHITHSF YLYKQVFSSN IFQPTINHKF KKIPFGSKLV EGKKILKMGR  60
APCCDKASVK KGPWSPEEDA RLKAYIEEHG TGNNWIALPQ KIGLKRCGKS CRLRWLNYLR  120
PNIKHGGFTE EEDNIICSLY ISIGSRWSII AAQLPGRTDN DIKNYWNTRL KKKLLGKRKQ  180
SQMNRLLLAG GQDLKETNGL EENSLLQNLS NSALERLQLH MQLQSLQNPL SFYNNPALWP  240
KLTPLQQKMI QTLQATGLSI ENQSSLLAQI SPSANQVDQL GQKVGINEFA NTMSTRFKVN  300
NEVEKSTVNN GISSSDSPID FSNQKDVLDT NIGQENTGEI QGIQGFTQAE IDDLILINNK  360
GLIADQFDCF KEMDGSSSRD NLAWWSNDFD TNTTSSNSWG SSSNNIVQQT EGMYQDYALG  420
YNLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23711747108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-126HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-126HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608553.10.0PREDICTED: transcription factor MYB36
RefseqXP_016458757.10.0PREDICTED: transcription factor MYB36-like
SwissprotQ9FKL21e-101MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1S3Z3K40.0A0A1S3Z3K4_TOBAC; transcription factor MYB36-like
STRINGXP_009608553.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-88myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]