PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00050g00101.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 467aa MW: 52735.4 Da PI: 6.5102 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 471.5 | 4.5e-144 | 49 | 464 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++lLl+cA++v++g+le+a+ +L ++s+laspdgd+mqR+a+yf+eALa r++rs++++ykal++++ s +se + + k+f+ Peaxi162Scf00050g00101.1 49 LIHLLLTCANHVAAGSLENANIALDQISQLASPDGDTMQRIASYFAEALADRILRSWPGIYKALHSTKLS--VVSEDILVKKMFF 131 689*************************************************************999998..69*********** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 e +P+lk++ +++NqaI ea+ege++vHi+D+++s++lQW aLlq L++Rpegpp+lRiTgv++ +ke le++++ L++ Ae Peaxi162Scf00050g00101.1 132 EYFPFLKVASVITNQAIIEAMEGEKMVHIVDLNASEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLEQIAHVLTEEAE 212 ****************************************************************....9**************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll......................................... 214 +l++pf+f+ v+++le+l++e+Lr+k+gEala+++v+qlh+ll Peaxi162Scf00050g00101.1 213 KLDIPFQFHQ-VVSKLENLDVEKLRIKTGEALAISSVMQLHTLLahdcehqkksplafkhlnghhlkralfnpnntlgellekdt 296 **********.799*********************************************************************** PP GRAS 215 ..........desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 +++ + d +L+++++lsPkv+vv+eq+++hn+++++er++e+l++y+alfd+le +l r+s er kvE+ Peaxi162Scf00050g00101.1 297 gnesasssplSST----AsaKMDGFLHALWGLSPKVMVVTEQDSNHNGTTLMERLSESLYFYAALFDCLEFTLQRTSLERLKVEK 377 ****886653222....1335799************************************************************* PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 +l+g+ei+n+vaceg er+erhe+l kW +r++ aGF++vpls++a+ qa++ll+ + +gy+++ee+g++v++W+dr+L+svSa Peaxi162Scf00050g00101.1 378 MLFGEEIKNIVACEGVERKERHEKLDKWFQRFDGAGFGNVPLSYYAMLQARRLLQSYTCEGYKIKEENGCVVICWQDRALFSVSA 462 ************************************************************************************* PP GRAS 373 Wr 374 Wr Peaxi162Scf00050g00101.1 463 WR 464 *8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.483 | 23 | 444 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-141 | 49 | 464 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 467 aa Download sequence Send to blast |
MLQQDDGSSS VTSSSPLQNF PMMSLSPNFG GSPYHWLKEL KSEERGLYLI HLLLTCANHV 60 AAGSLENANI ALDQISQLAS PDGDTMQRIA SYFAEALADR ILRSWPGIYK ALHSTKLSVV 120 SEDILVKKMF FEYFPFLKVA SVITNQAIIE AMEGEKMVHI VDLNASEPLQ WRALLQDLSA 180 RPEGPPHLRI TGVHQQKEVL EQIAHVLTEE AEKLDIPFQF HQVVSKLENL DVEKLRIKTG 240 EALAISSVMQ LHTLLAHDCE HQKKSPLAFK HLNGHHLKRA LFNPNNTLGE LLEKDTGNES 300 ASSSPLSSTA SAKMDGFLHA LWGLSPKVMV VTEQDSNHNG TTLMERLSES LYFYAALFDC 360 LEFTLQRTSL ERLKVEKMLF GEEIKNIVAC EGVERKERHE KLDKWFQRFD GAGFGNVPLS 420 YYAMLQARRL LQSYTCEGYK IKEENGCVVI CWQDRALFSV SAWRCRR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-69 | 32 | 466 | 1 | 380 | Protein SCARECROW |
5b3h_D | 6e-69 | 32 | 466 | 1 | 380 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016505834.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A1S4CXT4 | 0.0 | A0A1S4CXT4_TOBAC; scarecrow-like protein 3 | ||||
STRING | XP_009793219.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|