PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00050g00086.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24701 Da PI: 9.4538 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.6e-19 | 124 | 173 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++k +g+W+AeIrd k++r +lg+++ta+eAa a+++a+ +++g Peaxi162Scf00050g00086.1 124 KYRGVRQRK-WGKWAAEIRDaK----KKTRLWLGTYDTAYEAALAYDRAAIEIKG 173 8*******9.**********55....46***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-14 | 124 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.404 | 124 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 124 | 180 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-32 | 124 | 187 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-28 | 124 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.86E-30 | 124 | 179 | No hit | No description |
PRINTS | PR00367 | 2.3E-10 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MASKEELQKN DAAEKPSELV AVKKPSELDA VHSDAVGRPS ELDAVEKPIN QVGECSVVLP 60 RIVRIHMPDS SSDEEEKAGG EKSQRYEKTC VKEIIIENGR TKVISTKKYK VKKDIKPLQG 120 NVNKYRGVRQ RKWGKWAAEI RDAKKKTRLW LGTYDTAYEA ALAYDRAAIE IKGADAFTNI 180 LKPPPREANS DEPPPREVNS DKSPLREVNN KKPPSLPTDD A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-17 | 125 | 179 | 3 | 58 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-17 | 125 | 192 | 6 | 70 | ATERF1 |
3gcc_A | 5e-17 | 125 | 192 | 6 | 70 | ATERF1 |
5wx9_A | 3e-16 | 123 | 189 | 13 | 76 | Ethylene-responsive transcription factor ERF096 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016577764.1 | 5e-60 | PREDICTED: ethylene-responsive transcription factor CRF3-like isoform X2 | ||||
Refseq | XP_016577773.1 | 5e-60 | PREDICTED: ethylene-responsive transcription factor CRF3-like isoform X2 | ||||
Refseq | XP_016577781.1 | 5e-60 | PREDICTED: ethylene-responsive transcription factor CRF3-like isoform X2 | ||||
TrEMBL | A0A2G3DF99 | 6e-59 | A0A2G3DF99_CAPCH; Uncharacterized protein | ||||
STRING | XP_009627599.1 | 9e-57 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 3e-18 | cytokinin response factor 1 |