PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00047g02226.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family CO-like
Protein Properties Length: 413aa    MW: 45359.3 Da    PI: 5.3273
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00047g02226.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-07444539
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              +C+ ++e++++ +C+++  +lC +C  + H+       H++
  Peaxi162Scf00047g02226.1  4 ICEFCGEQRAIVYCRSDAACLCLSCDRNVHSAnalaqrHSR 44
                              7*****************************65777777776 PP
2zf-B_box24.26.9e-084688440
                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                               +C++++++++   C + ++ lC++C  ++H +      H+++
  Peaxi162Scf00047g02226.1 46 LICERCNSQPAVVRCIEEKTSLCQSCDWSGHAStsssstHKRQ 88
                              68*****************************778888888875 PP
3CCT61.82.2e-21356399144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               R +a+lRYkeK+ktRkF+K++rY sRKa+A+ R RvKGrFvk+ 
  Peaxi162Scf00047g02226.1 356 RSNAVLRYKEKKKTRKFDKQVRYVSRKARADVRRRVKGRFVKAG 399
                               899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.897147IPR000315B-box-type zinc finger
CDDcd000213.27E-8447No hitNo description
PfamPF006432.3E-5445IPR000315B-box-type zinc finger
SMARTSM003361.3E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.3144390IPR000315B-box-type zinc finger
CDDcd000212.27E-54777No hitNo description
SMARTSM003360.914890IPR000315B-box-type zinc finger
PfamPF062031.1E-15356398IPR010402CCT domain
PROSITE profilePS5101714.942356398IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGYICEFCGE QRAIVYCRSD AACLCLSCDR NVHSANALAQ RHSRTLICER CNSQPAVVRC  60
IEEKTSLCQS CDWSGHASTS SSSTHKRQAL SSYTGCPSSA ELSNTWSFLL DDPSVGDTCE  120
QRMGSMSIND SRPKTSQGPQ GKENLQDMCA AVEASDMHIS DKSTFLMESS MPTLDNKPHN  180
VEPIGSTNSA SLKGCYTVAK GSSLFEDDDP FYENLIMDEV DMSIENYEEL FGASLNYPDE  240
LFENENLDGL FGTKDVTSAD SSSRGANTAK GSSTARIKTV QPTCSNAESA DSVMSCKTDS  300
ILCFARQAQN SVSFSNHTEE SSAGDHQDCG ASPMLLMGEP PWGPPYPEIS SPSTSRSNAV  360
LRYKEKKKTR KFDKQVRYVS RKARADVRRR VKGRFVKAGD VYDYDPLSQT RSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477957.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-133COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0V0ILA20.0A0A0V0ILA2_SOLCH; Putative zinc finger protein CONSTANS-LIKE 9-like
TrEMBLM1CT820.0M1CT82_SOLTU; B-box zinc finger protein 8
STRINGPGSC0003DMT4000741430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-121CONSTANS-like 9