PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00047g01824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 431aa MW: 48149.3 Da PI: 6.1508 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ r g+ R++k+c++rw ++l Peaxi162Scf00047g01824.1 27 KGPWTAAEDAILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 74 79******************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.032 | 22 | 78 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-13 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 27 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.47E-24 | 28 | 103 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-23 | 28 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.19E-11 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 8.951 | 79 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 0.029 | 79 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00126 | 82 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-10 | 82 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MAPNGGGVKT SLARNISHGG TRHVLKKGPW TAAEDAILME YVKKHGEGNW NAVQRNSGLM 60 RCGKSCRLRW ANHLRPNLKK GAFSLEEERL IVELHAKLGN KWAHNEIKNY WNTRLKRRQR 120 AGLPIYPQDI QPQNQHEHNI SSLFDHPQNS NFINPPLSLL DIFNPSTMKP SVNSQQYQFN 180 NPSPFLTNTN NNNNHFKLFH DPRVSLSLTL ASSIRNSQLS SLVAPVPKTF SQGLTTSMQV 240 PPLQHNYPSF STNTRPYTAI STNPNGLILG MGIETTTCSR STGNDYMKAT SSSDADNYNV 300 VDPGLSRGNS GLLEDLLEES QTLTRAEKIE ENCLVDENEA SQGKLVWEEY GLTEESTYSF 360 AHGGDDTTPN SSSGITTKDA SLELANQVDD DIMRFLDNFP VAVPAPDWCD DENEQNNTCN 420 GHYFEPRDQM D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-22 | 25 | 118 | 5 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF198498 | 7e-94 | AF198498.1 Nicotiana tabacum anther-specific myb-related protein 2 (mybAS2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019265975.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
TrEMBL | A0A314L1C2 | 0.0 | A0A314L1C2_NICAT; Transcription factor gamyb | ||||
STRING | XP_009601500.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 2e-61 | myb domain protein 101 |