PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00045g01824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | CO-like | ||||||||
Protein Properties | Length: 336aa MW: 37525.1 Da PI: 6.0081 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.8 | 1.8e-07 | 3 | 44 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+ ++ ++ fC+ + +lC C +++H H + Peaxi162Scf00045g01824.1 3 RRCDSCKTTSATVFCKADMAFLCLGCDSKIHAAnklasrHAR 44 79******99*********************65566666655 PP | |||||||
2 | zf-B_box | 25 | 4e-08 | 46 | 90 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ +++ C+ + lC +C + +H+ H++ p+ Peaxi162Scf00045g01824.1 46 LVCEVCEHAPASVTCKADAAALCVTCDQDIHSAnplarrHERLPI 90 68*****************************66888888998876 PP | |||||||
3 | CCT | 69.8 | 6.7e-24 | 273 | 317 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e Peaxi162Scf00045g01824.1 273 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRNE 317 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.911 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.0E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.0E-5 | 3 | 44 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.30E-6 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 11.234 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.5E-6 | 46 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.69E-8 | 47 | 90 | No hit | No description |
SMART | SM00336 | 7.9E-11 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.787 | 273 | 315 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.8E-18 | 273 | 315 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MARRCDSCKT TSATVFCKAD MAFLCLGCDS KIHAANKLAS RHARVLVCEV CEHAPASVTC 60 KADAAALCVT CDQDIHSANP LARRHERLPI VPFYDSASAK SRAADETQLP ETEEEAEAES 120 WLLQAPNINI NNNNIGVEGN EYNKSAEYLF SDVDPYVDME MITDQKPCTD IQLHQEYKEA 180 DCVVPHVQNK NNEMIHLQGP VVDGYPTYHE MDFTGSKPFM YNFSTQSISQ SVSSSSMEVG 240 VVPDHNSMAD VSNTFVRNSS TDGLPTPVSS LDREARVLRY REKRKNRKFE KTIRYASRKA 300 YAETRPRIKG RFAKRNEIEV DSLIASDASY GVVPSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009604722.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like | ||||
Refseq | XP_016495106.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like isoform X2 | ||||
Swissprot | Q940T9 | 5e-95 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A1S4C1S7 | 0.0 | A0A1S4C1S7_TOBAC; zinc finger protein CONSTANS-LIKE 4-like isoform X2 | ||||
STRING | XP_009604722.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 8e-93 | CONSTANS-like 4 |