PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00045g01116.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family BES1
Protein Properties Length: 685aa    MW: 77781.4 Da    PI: 6.2401
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00045g01116.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822162.52.8e-50471932145
                    DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagss 85 
                               +sgrk+++kE+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+r+AGw v++DGttyr++  p+ ++++ +g+ 
  Peaxi162Scf00045g01116.1  47 SSGRKEREKEKERTKLRERHRRAITSRMLSGLRQYGNFPLPVRADMNDVLAALARQAGWNVDPDGTTYRQSPPPPnNNNNNIGTY 131
                               79*********************************************************************999989999***** PP

                    DUF822  86 asaspesslq.sslkssalaspvesysaspksssfpspssldsislasa.asllpvlsvlsl 145
                               + +s+es+++ ssl++++++  v+ ++++p+ ++ +sp+s+dsi ++++  ++ +++s++s 
  Peaxi162Scf00045g01116.1 132 QVMSVESPVSgSSLRNCSTRVSVDCQQSVPRINECLSPASFDSIVVTESdVKVDKFTSTTSP 193
                               ********************************************999876444444444433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.6E-5147189IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.803.8E-24221300IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514453.16E-135222298IPR017853Glycoside hydrolase superfamily
PfamPF013732.3E-9245301IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-24258272IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-24279297IPR001554Glycoside hydrolase, family 14
Gene3DG3DSA:3.20.20.809.8E-138324678IPR013781Glycoside hydrolase, catalytic domain
PfamPF013737.6E-64326641IPR001554Glycoside hydrolase, family 14
SuperFamilySSF514453.16E-135327676IPR017853Glycoside hydrolase superfamily
PRINTSPR007502.5E-24546557IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-24564587IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-24600622IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MNHHQQQQDP DPQFPNRNED PNPNPQPQPR RPRGFAATNT AGGTNKSSGR KEREKEKERT  60
KLRERHRRAI TSRMLSGLRQ YGNFPLPVRA DMNDVLAALA RQAGWNVDPD GTTYRQSPPP  120
PNNNNNNIGT YQVMSVESPV SGSSLRNCST RVSVDCQQSV PRINECLSPA SFDSIVVTES  180
DVKVDKFTST TSPMNSTECL EAGQLMQELH SGQHGSGFSG TEYVPVFVLL SSGLINNFCQ  240
LMDPDGVKQE LQQLKSLNID GVVVNCWWGI VESWVPQKYE WSGYRELFNI IRDFKMKLQV  300
LKHSLYLWID GLKMTQCFMG FCFLSTKVVM AFHENGGSDT SGMFISLPQW VLEIGKDNQD  360
IFFTDRQGRR NTECLSWGID KERVLRGRTA IEVYFDVMRS FRTEFDDLFT EGLISAVEIG  420
LGASGELKYP SFSERMGWRY PGIGEFQCYD KYSLQNLRKA ATSRGHSFWA KGPDNAGYYN  480
SKPHETGFFC ERGDYDSYYG RFFLHWYRQV LIDHADNVLS LASLAFEGIQ IVVKIPAIYW  540
WYRTSSHAAE LTAGYYNPTN QDGYSPVFEV LKKHSVTIKY ICSGVQVPET DEALADPEGL  600
SWQILNSAWD TALPIAGQNA FPCYDREGLM KLVETAKPTN DPDHHHFSFF VFQQPAPLVQ  660
SAICFSELDY FIKHMHGEIM NNVES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1v3i_A1e-11722367811444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754478e-98HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244442.10.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1S3ZH490.0A0A1S3ZH49_TOBAC; Beta-amylase
STRINGSolyc08g005780.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]