PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00045g00138.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 428aa MW: 48817.6 Da PI: 9.703 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l ++vk +G W+ ++ g++R++k+c++rw +yl Peaxi162Scf00045g00138.1 14 KGAWTKEEDEILGNYVKIHGAAKWNILCKKAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eEd l+++++ lG++ W++Ia+ ++ gRt++++k++w++ Peaxi162Scf00045g00138.1 67 RGNFSEEEDSLIINLHSSLGNK-WSKIASQLP-GRTDNEIKNHWNT 110 89********************.*********.***********97 PP | |||||||
3 | Myb_DNA-binding | 62.8 | 6.9e-20 | 211 | 258 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l+d++kq G +W + ar+ g++R++k+c++rw++yl Peaxi162Scf00045g00138.1 211 KGPWTEDEDEKLIDYIKQNGHTNWQSLARKAGLNRCGKSCRLRWNNYL 258 79*********************************************7 PP | |||||||
4 | Myb_DNA-binding | 57.5 | 3.1e-18 | 264 | 309 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++eE+e++++++ lG++ W++Ia++++ gRt++++k++++++l Peaxi162Scf00045g00138.1 264 RGRFSPEEEEIIINLHSDLGNK-WSKIAAHLP-GRTDNEIKNFYNTHL 309 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.777 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.01E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.02E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.058 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-16 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-11 | 69 | 112 | No hit | No description |
PROSITE profile | PS51294 | 26.746 | 206 | 262 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.97E-30 | 208 | 305 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-17 | 210 | 260 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-17 | 211 | 258 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 212 | 265 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-12 | 213 | 258 | No hit | No description |
PROSITE profile | PS51294 | 21.825 | 263 | 313 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-17 | 263 | 311 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-16 | 264 | 309 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 266 | 313 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.93E-12 | 266 | 309 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MGRSPCCTNN NLNKGAWTKE EDEILGNYVK IHGAAKWNIL CKKAGLNRCG KSCRLRWTNY 60 LRPDIKRGNF SEEEDSLIIN LHSSLGNKWS KIASQLPGRT DNEIKNHWNT KLRKKLNKLG 120 IEPQTHKQIP NFNLFNSLQM PPLFSQQDVT QLAKLQLLHF QTLLQTINAI TTTFPSNPLM 180 PNINYPMQDD VNGILNFSMP NFEEDDDNLK KGPWTEDEDE KLIDYIKQNG HTNWQSLARK 240 AGLNRCGKSC RLRWNNYLRP DIKRGRFSPE EEEIIINLHS DLGNKWSKIA AHLPGRTDNE 300 IKNFYNTHLR KKLLRLGIDP KTHKPISKLN SLVNLSHHLT SNSNYFLSLA SVLSLQAQFS 360 LLAKIQQVIQ SPLPTINTIN LLSSIQGNIL SNSSPQLESL RNETEMSKFL DSSLANTTTT 420 PCLDNTNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-30 | 9 | 313 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019240410.1 | 1e-106 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | Q9SBF3 | 7e-65 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A1J6JR86 | 1e-105 | A0A1J6JR86_NICAT; Transcription factor myb39 | ||||
STRING | XP_009622645.1 | 1e-104 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10280.1 | 3e-65 | myb domain protein 92 |
Publications ? help Back to Top | |||
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