PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00038g02140.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 550aa    MW: 61361.4 Da    PI: 5.3654
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00038g02140.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.72.5e-12254310155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++t+++Aa+a++ a++k++g
  Peaxi162Scf00038g02140.1 254 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDTEDKAARAYDLAALKYWG 310
                               78*******************333.44555535555.77***99*************98 PP
2AP2347.1e-11342385753
                       AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                               r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k+
  Peaxi162Scf00038g02140.1 342 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKY 385
                               89999*******988532...5**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-15254320IPR016177DNA-binding domain
PfamPF008471.1E-9254310IPR001471AP2/ERF domain
CDDcd000183.29E-19254318No hitNo description
Gene3DG3DSA:3.30.730.101.6E-12255319IPR001471AP2/ERF domain
PROSITE profilePS5103217.662255318IPR001471AP2/ERF domain
SMARTSM003808.6E-23255324IPR001471AP2/ERF domain
PROSITE profilePS5103213.116334395IPR001471AP2/ERF domain
CDDcd000182.95E-14342384No hitNo description
PfamPF008476.0E-6342385IPR001471AP2/ERF domain
SMARTSM003803.2E-10342387IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-10343388IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-10343385IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MSNWLGFSLT PDFRIDNDDE SRNEQDHQAS RNEVNSVEEA PLSVMPLRSS GSLCMMDPFP  60
HCEPTEDYWR YENHDMTNAG TNPDEEGPKL EDFLGCCYSN SPTREQEIAE INVNMPPSIN  120
QSDQELQHLE REANMKIIPS GLIPYGTTSC NNLQMMVPNG QFQNSHYELA NSSNGVYGHV  180
PFDGATSVSG FKSWLRQPTA APLISSAEEN SPSTYQTLSL TGATKKRPGA GKNVNGSREP  240
APRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG YDTEDKAARA  300
YDLAALKYWG PTTHINFPLN TYEKELEEMK NMNRQEFVAH LRRHHQHGRW QARIGRVAGN  360
KDLYLGTFST QEEAAEAYDI AAIKYDVKRI CSSSTLIAGD LAKRSPSKDS GICNQSSFED  420
YNSCTPSSSS PQPILAITNG EQLQQPADSF IDMMWSTNVT DEHRQNKASS RSSSSAPSPK  480
CSGSGSGSAE MSCDFGVGLE YPQAYYSSLE VQDHKFEDAR NGNDENPPNS GRMGTMDLVH  540
SVPMFALWNQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342914.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-102AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A3Q7GM430.0A0A3Q7GM43_SOLLC; Uncharacterized protein
STRINGXP_009763770.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.17e-92AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]