PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00038g01640.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 285aa    MW: 32110.2 Da    PI: 7.9579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00038g01640.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.2e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  Peaxi162Scf00038g01640.1 14 RGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                              788*******************************************97 PP
2Myb_DNA-binding46.96.5e-1567109145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               rg+++ +E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
  Peaxi162Scf00038g01640.1  67 RGSFSHQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                               899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425965IPR017930Myb domain
SuperFamilySSF466892.73E-2911108IPR009057Homeodomain-like
SMARTSM007178.3E-141363IPR001005SANT/Myb domain
PfamPF002494.8E-161461IPR001005SANT/Myb domain
CDDcd001671.18E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2465116IPR009057Homeodomain-like
SMARTSM007171.0E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129420.00266116IPR017930Myb domain
PfamPF002491.1E-1367110IPR001005SANT/Myb domain
CDDcd001677.84E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLIKYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SHQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSHG  120
TLSDHLSMFT NFTNPNPSPS FDNFYTLINP NNPVNLLPAI NSPLILQVDQ MNNVNEDLNA  180
NSMAPSLIPF SFDSIPNDPS WFFNYPHSQH DLDYKQDNSN SIVSSNISLN YTDAAGGILM  240
DSRNDPIKSS THQDLLVVPN LLPRLSPPAP LQQNFDSMVV NTSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795891.11e-140PREDICTED: myb-related protein 308 isoform X1
RefseqXP_016479067.11e-140PREDICTED: transcription factor MYB26-like isoform X1
TrEMBLA0A1S4AQP01e-139A0A1S4AQP0_TOBAC; transcription factor MYB26-like isoform X1
TrEMBLA0A1U7Y1Q81e-139A0A1U7Y1Q8_NICSY; myb-related protein 308 isoform X1
STRINGXP_009795891.11e-140(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-80myb domain protein 26