PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00038g00217.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 567aa MW: 63944.6 Da PI: 6.3686 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 250 | 9.4e-77 | 181 | 561 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalklf 84 ++lL cA a++ g+++++q+lL l+elas +gd+++Rlaa+ ++AL ++l++ +s+ ++a+ ++++ +++n++ ++l f Peaxi162Scf00038g00217.1 181 EHLLNPCAAAITVGNMNRVQHLLYVLQELASFTGDANHRLAAHGLRALTHHLSSpGSSSASSAFvEVTTFASNNHKFFRNSLINF 265 699***************************************************644455555547788888888888888888* PP GRAS 85 sevsPilkfshltaNqaIleavegeerv...HiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........ske 156 ++ sP++++ + +aN+ +l+ + +++rv Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T++ + ++ Peaxi162Scf00038g00217.1 266 NDNSPWFRIPNHIANSSVLQILGEQDRVrnlHILDIGVSHGVQWPTLLEELTRRSgGPPPLVRLTVITPTIENgelrdtpfvIGP 350 *************************888888************************55666********97666788888777777 PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 + ++L fA+++++++++n l l +l+ + ++ +++E+l+++ +++lh+l +s ++ r+e+L+++ksl+Pk vv+ Peaxi162Scf00038g00217.1 351 PGYNFSSQLLAFAKAININLQINRLDNFPLRNLNSQVINSSTDETLVICAQFRLHNLQ---HSNSDDRTELLRILKSLEPKGVVL 432 788999******************8777*****************************8...56666689**************** PP GRAS 242 veqeadh..ns.esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 +e+++++ ns ++F++ f++ +ey ++++ds+++ + + r + Er++++ e+ +++++ g++ +e++ekW er++++G Peaxi162Scf00038g00217.1 433 SENNMECscNScGDFMTTFSRRVEYLWMFLDSTSVAY----KGRESEERRMMEGEAAKALTNMGEM----NERKEKWCERMRSVG 509 ***97764354259*******************9885....7777888888888899*******99....88888********** PP GRAS 324 Fkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 F + ++e+ + a++llrk++ ++++rvee++g++ l Wk++p+ ++S W+ Peaxi162Scf00038g00217.1 510 FVKEVFGEDGIDGARALLRKYDnNWEMRVEERDGCVDLWWKGQPISFCSLWK 561 **********************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.852 | 154 | 540 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-74 | 181 | 561 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MIKHQNILSH HPSSWFSDTM TIGEPEPIST SDPISEWLGT LSDVPSFLDE PYYPEDLDFY 60 GDSWWDPNQD KQIVNQNIIN NTCTSFDSSS PANTATSTIP PEPIILDHLQ PLDQSKKRKT 120 PGSDQNSKTT RKNQNRQMND GDDGHAVVEQ GATIKRSTGP KRVTNKSSGN NSNNKEGRWA 180 EHLLNPCAAA ITVGNMNRVQ HLLYVLQELA SFTGDANHRL AAHGLRALTH HLSSPGSSSA 240 SSAFVEVTTF ASNNHKFFRN SLINFNDNSP WFRIPNHIAN SSVLQILGEQ DRVRNLHILD 300 IGVSHGVQWP TLLEELTRRS GGPPPLVRLT VITPTIENGE LRDTPFVIGP PGYNFSSQLL 360 AFAKAININL QINRLDNFPL RNLNSQVINS STDETLVICA QFRLHNLQHS NSDDRTELLR 420 ILKSLEPKGV VLSENNMECS CNSCGDFMTT FSRRVEYLWM FLDSTSVAYK GRESEERRMM 480 EGEAAKALTN MGEMNERKEK WCERMRSVGF VKEVFGEDGI DGARALLRKY DNNWEMRVEE 540 RDGCVDLWWK GQPISFCSLW KIDPKCK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 2e-31 | 177 | 561 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 2e-31 | 177 | 561 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 2e-31 | 177 | 561 | 30 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009600029.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Refseq | XP_016460867.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A1S3Z9H4 | 0.0 | A0A1S3Z9H4_TOBAC; nodulation-signaling pathway 1 protein-like | ||||
STRING | XP_009600029.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-146 | GRAS family protein |
Publications ? help Back to Top | |||
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