PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00036g00710.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 333aa    MW: 37899.7 Da    PI: 8.3866
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00036g00710.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.7e-171360148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg W++eEde+l++++  +G ++W+++++  g+ R++k+c++rw +yl
  Peaxi162Scf00036g00710.1 13 RGLWSPEEDEKLIRYISNHGHNCWSSVPKLTGLQRCGKSCRLRWINYL 60
                              788*******************************************97 PP
2Myb_DNA-binding49.21.3e-1566109146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg++++ E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Peaxi162Scf00036g00710.1  66 RGSFSEAEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                               899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-26463IPR009057Homeodomain-like
PROSITE profilePS5129425.292864IPR017930Myb domain
SuperFamilySSF466892.4E-2810107IPR009057Homeodomain-like
SMARTSM007171.6E-131262IPR001005SANT/Myb domain
PfamPF002491.6E-151360IPR001005SANT/Myb domain
CDDcd001679.99E-121660No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2464114IPR009057Homeodomain-like
SMARTSM007173.7E-1565113IPR001005SANT/Myb domain
PROSITE profilePS5129419.54365115IPR017930Myb domain
PfamPF002492.2E-1466109IPR001005SANT/Myb domain
CDDcd001676.12E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLIRYISN HGHNCWSSVP KLTGLQRCGK SCRLRWINYL  60
RPDVKRGSFS EAEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKPISQGL  120
DPNTHNLLSR NSTQNNKNNA SCKVKSTSVF TLETMPSSNK EVPMDMIKSS LAAFLPLPHN  180
SKTISTAAYN DNMNSINVPR TTTNIDFPRS SLMESTSNNY LSSLTPPGYG IINYENYCMW  240
AVSGVERHDF GPSINGHEEM RIVEQEGGQV VQLQEKVFQA EEVYKINHDQ FNINGQKTYV  300
DDANFSFESV DSALMMPYGI YTSVKSIDHF AWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-31131147107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622248.11e-139PREDICTED: transcription factor MYB86-like
RefseqXP_016470040.11e-139PREDICTED: transcription factor MYB86-like
SwissprotQ8LPH63e-67MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A1S4A0C31e-137A0A1S4A0C3_TOBAC; transcription factor MYB86-like
STRINGXP_009622248.11e-138(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-82myb domain protein 67