PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00030g00410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 28371.7 Da PI: 9.6789 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.1e-17 | 121 | 172 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp kr+r +lg++ t e+Aa a+++a+ kl+g+ Peaxi162Scf00030g00410.1 121 RYRGVRRRP-WGKFAAEIRDP---TrKRARLWLGTYETSEDAALAYDRAAYKLRGA 172 69*******.**********8...3346**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.21E-31 | 120 | 181 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-31 | 121 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-22 | 121 | 180 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-34 | 121 | 185 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.724 | 121 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-13 | 121 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-13 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-13 | 161 | 181 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MYSIDTQTRN TQPNKMQLGH ISSEFDLTLI PHSIEHLFED SSFSELSPLF NYNDSIFQTP 60 SSNSSSAESC TNWDQILYDN NIGDTTTTPS PTSFSYQSEN VFAHPTKSEE RGVQTTPNWQ 120 RYRGVRRRPW GKFAAEIRDP TRKRARLWLG TYETSEDAAL AYDRAAYKLR GARASLNFPH 180 LISSNVSEIN RVKPKRRLKS IELSSSQNTA KIDTPSPKKR NVELINSLAK ANLNKHISIM 240 ERIELATLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-28 | 120 | 184 | 4 | 68 | ATERF1 |
3gcc_A | 1e-28 | 120 | 184 | 4 | 68 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 199 | PKRRLKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ259605 | 0.0 | HQ259605.1 Petunia x hybrida ethylene-responsive-element-binding factor 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607861.1 | 4e-60 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | E3VVS0 | 1e-136 | E3VVS0_PETHY; Ethylene-responsive-element-binding factor 11 | ||||
STRING | XP_009607861.1 | 2e-59 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 3e-36 | ethylene-responsive element binding factor 13 |