PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00026g00138.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family SBP
Protein Properties Length: 550aa    MW: 61779.1 Da    PI: 7.8893
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00026g00138.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP681.8e-21194239247
                               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS CS
                       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs 47 
                               Cqv gC++dls+ k+yh++hkvC+ hska++v+v+g+eqrfCqqC 
  Peaxi162Scf00026g00138.1 194 CQVYGCNKDLSSSKDYHKKHKVCDEHSKAAKVIVNGIEQRFCQQCN 239
                               *********************************************6 PP
2SBP45.81.6e-142672974777
                               SSEEETTT--SS--S-STTTT-------S-- CS
                       SBP  47 srfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                rfh l  fDe+krsCr+rLa+hnerrrk+q
  Peaxi162Scf00026g00138.1 267 CRFHLLGAFDEGKRSCRKRLAGHNERRRKPQ 297
                               59***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-29188283IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.068191296IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.55E-20192240IPR004333Transcription factor, SBP-box
PfamPF031106.7E-17194239IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-11267301IPR004333Transcription factor, SBP-box
PfamPF031101.2E-7268295IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MSTRKAMEPM NYALEGRGFL LHDNIELPIS GLATSRNLIT FCDVDRIMFG TSQEISENTE  60
FGGSGIADIL RKIEASNPWS GGLGVESDEV ELETANRHND SISLPIGLKL ERLIDYGEAR  120
SCQSSKGSSV LSLAESLLPL GKSQHGRREE PSIVYREVKS NSPLVENSAM SSLEPLLLGE  180
RSRTTNLHSQ VPLCQVYGCN KDLSSSKDYH KKHKVCDEHS KAAKVIVNGI EQRFCQQCNL  240
ADKNVFGESY KVKCILLLLP SLILCGCRFH LLGAFDEGKR SCRKRLAGHN ERRRKPQFDT  300
HWGAKLLDMT SQRRVPFLFP EIHPGSPFCQ ERCEDRCKHI KLEETPICIS ELDVAMTKKQ  360
SPTKNLQHHH GMRKQNSTKI HLGATVSVQE LSAGQNSTCA LSLLSAHSQH LLHHSENHCA  420
YLKRDHSLEK ICGISDSRSF SSNQLYPSEG SDIDKIVRVL DDGQAASIEV LSERHVRRSN  480
SMNSKHGLSP ENGPTMDLVQ LSSHLQRVEQ LKNAVQVKQE DDIFSYEDYE SCKPLIYATK  540
ILRSFYYKHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-22189295684squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732950.0LC073295.1 Nicotiana tabacum NtabSPL6-7 mRNA for squamosa promoter binding protein NtabSPL6-7, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600444.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_018626210.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A2K9ZXI10.0A0A2K9ZXI1_PETHY; Squamosa promoter binding-like protein 6b
STRINGXP_009600444.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.15e-40SBP family protein