PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00025g03116.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 23551.9 Da PI: 8.9044 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.7 | 1.1e-21 | 154 | 203 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa+a+++a++k++g Peaxi162Scf00025g03116.1 154 KYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEAAARAYDEAALKFRG 203 8********.**********76....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.4E-34 | 153 | 212 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.646 | 154 | 211 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-14 | 154 | 203 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.50E-22 | 154 | 213 | No hit | No description |
SuperFamily | SSF54171 | 1.96E-23 | 154 | 212 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.0E-36 | 154 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 155 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 177 | 193 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MCIYKVANPR DKTNKFISRD DHGELNNVLE SMFSGSINRE QEMSIMVSAL THVVAGEDDI 60 MKGLAENGYA GSGLSSWGVG EKRGRVKEQS GQHFLHGSTS DMRSSSGGEG SSIRTITSST 120 PTTEAAYVYT STNDHQSYGG DNNNNNNNEP IRRKYRGVRQ RPWGKWAAEI RDPYKATRVW 180 LGTFDTAEAA ARAYDEAALK FRGSKAKLNF PEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-23 | 153 | 211 | 4 | 63 | ATERF1 |
3gcc_A | 7e-23 | 153 | 211 | 4 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT990489 | 2e-46 | CT990489.3 S.lycopersicum DNA sequence from clone LE_HBa-20F17 on chromosome 4, complete sequence. | |||
GenBank | HG975516 | 2e-46 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016512157.1 | 3e-82 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
Swissprot | Q9FGF8 | 2e-33 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A1S4DFC3 | 6e-81 | A0A1S4DFC3_TOBAC; ethylene-responsive transcription factor ABR1-like | ||||
STRING | XP_009589948.1 | 8e-81 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 9e-28 | related to AP2 6 |
Publications ? help Back to Top | |||
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