PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00024g00291.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 26967.8 Da PI: 5.0303 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 90 | 141 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrd + ng r++lg+f++ae Aa a+++a+ +++g+ Peaxi162Scf00024g00291.1 90 SYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAETAALAYDQAAFSMRGA 141 69*******.**********44465..*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.89E-29 | 89 | 149 | No hit | No description |
SMART | SM00380 | 6.6E-37 | 90 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-13 | 90 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-22 | 90 | 150 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.077 | 90 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 90 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 91 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDSSSYSSHF FYPMNSDLSS DSSWEWSNFN STSLPFNVDD SEEMLLFGVL ANAAQETTSE 60 TVTSYHVKDE EVSSKIEVQE KQEKPIKDKS YRGVRRRPWG KFAAEIRDST RNGVRVWLGT 120 FDSAETAALA YDQAAFSMRG ASAILNFPVE TVRESLRDMK CQVDDNCSPV VALKKRHSMR 180 KRSLNKKTSS SSNSKVVREV KMENVNNVVV FEDLGADFLE QLLSTSSSDQ SSSDASFSPW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-29 | 91 | 150 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00374 | DAP | Transfer from AT3G23240 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019233068.1 | 1e-127 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 1e-73 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1J6KC41 | 1e-126 | A0A1J6KC41_NICAT; Ethylene-responsive transcription factor 1b | ||||
STRING | XP_009606435.1 | 1e-115 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 6e-58 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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