PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00021g00213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | TCP | ||||||||
Protein Properties | Length: 211aa MW: 22362.1 Da PI: 10.012 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.5 | 9.6e-38 | 16 | 109 | 3 | 91 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++ +++ +ss+s Peaxi162Scf00021g00213.1 16 VKKAPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPATFStlSNSLLNSSTS-- 98 699*****************************************************************777432222222222.. PP TCP 86 ssg.....kaa 91 + + k+a Peaxi162Scf00021g00213.1 99 TVSapldhKSA 109 22233543333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-34 | 21 | 116 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.675 | 21 | 75 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MSTSVEGNGA AANNGVKKAP AKDRHSKVDG RGRRIRMPIV CAARVFQLTR ELGHKSDGQT 60 IEWLLRQAEP SIIAATGTGT IPATFSTLSN SLLNSSTSTV SAPLDHKSAP FLLGKRLRSE 120 EDGEQNKDVV GPTAGFWAVP ARPDYGQVWS FAAAPPQEMG LLNSANSRFM GEVSSAGRVG 180 NYFPIAQGHL NLLASLSGPV QLGRRDDDGG H |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC239435 | 9e-55 | AC239435.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-305j13 map 1, complete sequence. | |||
GenBank | GQ496333 | 9e-55 | GQ496333.1 Solanum lycopersicum TCP transcription factor 15 (TCP15) mRNA, complete cds. | |||
GenBank | HG975440 | 9e-55 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 9e-55 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233810.1 | 4e-99 | TCP transcription factor 15 | ||||
Swissprot | Q9FMX2 | 4e-76 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | G3BGV5 | 1e-97 | G3BGV5_SOLLC; TCP transcription factor 15 | ||||
STRING | Solyc01g008230.2.1 | 2e-98 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3951 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-59 | TCP family protein |