PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00020g02349.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 241aa    MW: 28142.5 Da    PI: 7.6609
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00020g02349.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.21.2e-201865148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd+ll ++v+++G g+W++++r+ g++Rt+k+c++rw +yl
  Peaxi162Scf00020g02349.1 18 KGPWTPEEDKLLSEYVNLHGEGRWSSVSRCAGLNRTGKSCRLRWVNYL 65
                              79********************************************97 PP

2Myb_DNA-binding51.52.4e-1671115147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  Peaxi162Scf00020g02349.1  71 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 115
                               6778******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7221365IPR017930Myb domain
SuperFamilySSF466896.5E-3216112IPR009057Homeodomain-like
SMARTSM007171.1E-171767IPR001005SANT/Myb domain
PfamPF002494.0E-191865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-241972IPR009057Homeodomain-like
CDDcd001677.97E-132065No hitNo description
PROSITE profilePS5129424.89266120IPR017930Myb domain
SMARTSM007172.3E-1470118IPR001005SANT/Myb domain
PfamPF002493.3E-1471115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2473119IPR009057Homeodomain-like
CDDcd001679.44E-1075116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVGMMGWGAN SDQQEWRKGP WTPEEDKLLS EYVNLHGEGR WSSVSRCAGL NRTGKSCRLR  60
WVNYLRPGLK RGHITPQEEG IIIELHALWG NKWSTIARYL PGRTDNEIKN YWRTHFKKKE  120
KASSKQDKRK TLRQRINNQP QLQHDTNYKF SPQPEEVIMQ NSDEINEHND TLTFTYHPNM  180
ENTIVDLPPV RTSSDISYIW TDNFVMDGLW GGLWNLDVDD HSQPASDKCK VAIQNQPTDY  240
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24181197107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-47HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562250.11e-124PREDICTED: myb-related protein 340
TrEMBLA0A2G3D9071e-125A0A2G3D907_CAPCH; Transcription factor MYB59
STRINGXP_009610111.11e-123(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.13e-71myb domain protein 121