PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00018g00228.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 352aa    MW: 40756 Da    PI: 10.0072
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00018g00228.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.3e-161461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g WT+eEd +l  +v+++G+ +W+  ++  g+ R++k+c++rw++yl
  Peaxi162Scf00018g00228.1 14 KGTWTPEEDRKLTAYVTRYGSWNWRQLPKFAGLSRCGKSCRLRWLNYL 61
                              799*******************************************97 PP

2Myb_DNA-binding521.6e-1667110146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+ T+eEde + +++++ G++ W+ Ia++++ gR+++++k++w++
  Peaxi162Scf00018g00228.1  67 RGNYTKEEDEMIMKLHAEIGNK-WSVIAAHLP-GRSDNEVKNHWHT 110
                               899*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.956961IPR017930Myb domain
SuperFamilySSF466896.34E-3011108IPR009057Homeodomain-like
SMARTSM007172.3E-111363IPR001005SANT/Myb domain
PfamPF002491.2E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221568IPR009057Homeodomain-like
CDDcd001673.78E-81661No hitNo description
PROSITE profilePS5129424.09462116IPR017930Myb domain
SMARTSM007172.0E-1566114IPR001005SANT/Myb domain
PfamPF002493.8E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2569115IPR009057Homeodomain-like
CDDcd001676.17E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGRTRCYDKS GLKKGTWTPE EDRKLTAYVT RYGSWNWRQL PKFAGLSRCG KSCRLRWLNY  60
LQPNIRRGNY TKEEDEMIMK LHAEIGNKWS VIAAHLPGRS DNEVKNHWHT SLKKRSTQEE  120
STSSTGSERR SNNSKYISSS RNKRRENGTQ ISANSNIPQL SPKQSCSELS SCASVDQHVE  180
NMHAEREVFQ EEYLFEESSL ISFWTEPFIV DNFSTTSDFF VTSQTDGGLV SPFSPFTRVI  240
WVIFQFCAYH PWHLDGTPDK RDISLAALVV SKSKSLVESF DTKLKENMMN DEPKKLIIEL  300
SVLKMKKLRN HCRPCARAVD PRERSERNNG GRLEKRRAPV MNRQSNRWPP HA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121155107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779987.11e-123PREDICTED: myb-related protein Myb4-like
RefseqXP_016433966.11e-123PREDICTED: myb-related protein Myb4-like isoform X1
TrEMBLA0A1S3X2C01e-122A0A1S3X2C0_TOBAC; myb-related protein Myb4-like isoform X1
TrEMBLA0A1U7WJ831e-122A0A1U7WJ83_NICSY; myb-related protein Myb4-like
STRINGXP_009779987.11e-123(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-51myb domain protein 15