PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00018g00228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 352aa MW: 40756 Da PI: 10.0072 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l +v+++G+ +W+ ++ g+ R++k+c++rw++yl Peaxi162Scf00018g00228.1 14 KGTWTPEEDRKLTAYVTRYGSWNWRQLPKFAGLSRCGKSCRLRWLNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEde + +++++ G++ W+ Ia++++ gR+++++k++w++ Peaxi162Scf00018g00228.1 67 RGNYTKEEDEMIMKLHAEIGNK-WSVIAAHLP-GRSDNEVKNHWHT 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.956 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.34E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.78E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.094 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-25 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.17E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MGRTRCYDKS GLKKGTWTPE EDRKLTAYVT RYGSWNWRQL PKFAGLSRCG KSCRLRWLNY 60 LQPNIRRGNY TKEEDEMIMK LHAEIGNKWS VIAAHLPGRS DNEVKNHWHT SLKKRSTQEE 120 STSSTGSERR SNNSKYISSS RNKRRENGTQ ISANSNIPQL SPKQSCSELS SCASVDQHVE 180 NMHAEREVFQ EEYLFEESSL ISFWTEPFIV DNFSTTSDFF VTSQTDGGLV SPFSPFTRVI 240 WVIFQFCAYH PWHLDGTPDK RDISLAALVV SKSKSLVESF DTKLKENMMN DEPKKLIIEL 300 SVLKMKKLRN HCRPCARAVD PRERSERNNG GRLEKRRAPV MNRQSNRWPP HA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 12 | 115 | 5 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779987.1 | 1e-123 | PREDICTED: myb-related protein Myb4-like | ||||
Refseq | XP_016433966.1 | 1e-123 | PREDICTED: myb-related protein Myb4-like isoform X1 | ||||
TrEMBL | A0A1S3X2C0 | 1e-122 | A0A1S3X2C0_TOBAC; myb-related protein Myb4-like isoform X1 | ||||
TrEMBL | A0A1U7WJ83 | 1e-122 | A0A1U7WJ83_NICSY; myb-related protein Myb4-like | ||||
STRING | XP_009779987.1 | 1e-123 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-51 | myb domain protein 15 |