PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g00151.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 303aa    MW: 34238.6 Da    PI: 8.251
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g00151.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.6e-18220253134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++C++ kTp+WR gp g+ktLCnaCG++y++ +
  Peaxi162Scf00016g00151.1 220 CTHCQVNKTPQWRTGPLGPKTLCNACGVRYKSGR 253
                               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.44214250IPR000679Zinc finger, GATA-type
SMARTSM004012.6E-13214264IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-14216277No hitNo description
Gene3DG3DSA:3.30.50.104.1E-14217251IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.66E-13219268No hitNo description
PfamPF003203.3E-16220253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MELIEARALK SSFYSDMSMK TSQQVFLDDI WCVTGINNVP SDDFSVDDLL DFSDKEFKDG  60
SLQELHEDDE KDSFSGSSQH RNSQWLSQFV DDSTSQYSLL CPAGSYKAKT GGFQEFRSEP  120
VVPKMRAPCF PLPVQRKPRS KRSRPISKDR LLDRLFSTWS FLSLPVSGDT CSPTSSSYGS  180
SPFLFMNPVQ EYDMFCSVEK PALKKPKKNA SAEPGSGRRC THCQVNKTPQ WRTGPLGPKT  240
LCNACGVRYK SGRLFPEYRP ACSPTFSEEM HSNSHRKVLE MRRKKETPVE FVDSGLTSMV  300
STY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1076927e-84AB107692.1 Nicotiana tabacum AGP4 mRNA for AG-motif binding protein-4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802570.11e-151PREDICTED: GATA transcription factor 5-like
TrEMBLA0A1U7YUW41e-150A0A1U7YUW4_NICSY; GATA transcription factor
STRINGXP_009802570.11e-150(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-41GATA transcription factor 5