PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00016g00005.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

BBR-BPC

Protein Properties

Length: 301aa MW: 33938.8 Da PI: 9.8009

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00016g00005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	286.6	1.1e-87	16	301	27	301
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerd...............maflqrdkalae....rnkalverdnkllalllvensla 92 ++ ++ aerd++i+er+ a+ + + erd a+ +rd a++ r+ al erdn+++al + e +++ Peaxi162Scf00016g00005.1 16 KIRTLSAERDTAIEERDRAVEA----LEERDlaiqraleerdlamqRALEERDLAIQRviseRDTALKERDNAIAALHFLESTMN 96 4444445888888666654432....222222222223333377665666777665433333***************999866 PP GAGA_bind 93 salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177 +l g+ +gtk ++ ++++++ ++ +++ r+ +++a+pi+ ++a ++ ++k+++ +k +k ak+++k +k ++ Peaxi162Scf00016g00005.1 97 GTL--GC-RTHGTKRPNQPKHHRDNSINSVCIQ-RDVPITDAFPISAISSKAAKAVQVKRTKVNKGMPTKSAKSPRK-AKKVSED 176 555..33.3466777666666555666666665.9999999999999988888888887666555554444554444.3334455 PP GAGA_bind 178 vkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmS 261 +++ + + skae++ +dl +ln +++Dest+P+PvC+CtG +rqCYkWG+GGWqS+CCtt +S yPLP+ +++r+aRi+grKmS Peaxi162Scf00016g00005.1 177 LNRHLTTDGSKAEWDAQDLgSLNLINFDESTMPIPVCTCTGLPRQCYKWGSGGWQSSCCTTYLSEYPLPQLPNKRHARIGGRKMS 261 5555555679*****88************************************************************ PP GAGA_bind 262 qgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +++f++lL +La+ Gydls pvDLk++WAkHGtn+++ti+ Peaxi162Scf00016g00005.1 262 GSVFSRLLTRLASAGYDLSIPVDLKTYWAKHGTNRYITIK 301 *************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.1E-97	7	301	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.1E-88	8	301	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MLPHYQMDQE TFIMKKIRTL SAERDTAIEE RDRAVEALEE RDLAIQRALE ERDLAMQRAL 60 EERDLAIQRV ISERDTALKE RDNAIAALHF LESTMNGTLG CRTHGTKRPN QPKHHRDNSI 120 NSVCIQRDVP ITDAFPISAI SSKAAKAVQV KRTKVNKGMP TKSAKSPRKA KKVSEDLNRH 180 LTTDGSKAEW DAQDLGSLNL INFDESTMPI PVCTCTGLPR QCYKWGSGGW QSSCCTTYLS 240 EYPLPQLPNK RHARIGGRKM SGSVFSRLLT RLASAGYDLS IPVDLKTYWA KHGTNRYITI 300 K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982315	0.0	FJ982315.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804621.1	1e-171	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_009804622.1	1e-171	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_016442557.1	1e-171	PREDICTED: protein BASIC PENTACYSTEINE4-like
TrEMBL	A0A1S3XSA2	1e-169	A0A1S3XSA2_TOBAC; protein BASIC PENTACYSTEINE4-like
TrEMBL	A0A1U7YRN9	1e-169	A0A1U7YRN9_NICSY; protein BASIC PENTACYSTEINE4-like
STRING	XP_009804621.1	1e-170	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9287	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-89	basic pentacysteine 4