PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00015g01036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 202aa MW: 23027.9 Da PI: 7.5953 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.1e-18 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd llv+++ +G g+W+ a++ g++Rt+k+c++rw++yl Peaxi162Scf00015g01036.1 20 RGPWTVEEDTLLVHYISHHGEGRWNILAKRAGLKRTGKSCRLRWLNYL 67 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 73 | 116 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ + G++ W++Ia++++ gRt++++k++w++ Peaxi162Scf00015g01036.1 73 RGNLTPQEQLLILELHSKIGNR-WSKIAQYLP-GRTDNEIKNYWRT 116 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.26 | 15 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-32 | 17 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-17 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-23 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.44E-12 | 22 | 67 | No hit | No description |
SMART | SM00717 | 3.4E-14 | 72 | 120 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.919 | 72 | 122 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.5E-15 | 73 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-24 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.58E-11 | 77 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTSLSKSSSS SSDDDIGLRR GPWTVEEDTL LVHYISHHGE GRWNILAKRA GLKRTGKSCR 60 LRWLNYLKPD VKRGNLTPQE QLLILELHSK IGNRWSKIAQ YLPGRTDNEI KNYWRTRVQK 120 QARHLKIDSS ISECSNLIPP GDSGLNTFIK AHFPLDGESY DMDTFSPATC SFKDVLYYDQ 180 MSGENNAPGD VLADSFWSMD EF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 18 | 122 | 5 | 108 | B-MYB |
1gv2_A | 2e-27 | 18 | 122 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-27 | 18 | 122 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-27 | 18 | 122 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ538949 | 9e-58 | AJ538949.1 Nicotiana tabacum cDNA-AFLP-fragment BT3-M23-017. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236420.2 | 3e-89 | transcription factor MYB62-like | ||||
Swissprot | Q9C9G7 | 2e-67 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A3Q7FT00 | 8e-88 | A0A3Q7FT00_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g119370.1.1 | 1e-88 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 5e-69 | myb domain protein 62 |
Publications ? help Back to Top | |||
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