PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00014g00715.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 286aa    MW: 32779.3 Da    PI: 6.1832
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00014g00715.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.2e-092974346
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                              rWT+eE + + da +++ ++   +W  +a++++ g+t ++++  ++ 
  Peaxi162Scf00014g00715.1 29 RWTAEENKMFEDALALFDKDtpdRWCNVAAMIP-GKTVNDVIKQYRE 74
                              9********************************.********99986 PP
2Myb_DNA-binding46.31e-14146190347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Peaxi162Scf00014g00715.1 146 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 190
                               8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.7872580IPR017884SANT domain
SMARTSM007172.9E-102678IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-42875IPR009057Homeodomain-like
SuperFamilySSF466897.18E-122984IPR009057Homeodomain-like
PfamPF002496.0E-72975IPR001005SANT/Myb domain
CDDcd001672.56E-82976No hitNo description
PROSITE profilePS5129421.106139195IPR017930Myb domain
SuperFamilySSF466891.86E-17141194IPR009057Homeodomain-like
TIGRFAMsTIGR015578.2E-18142194IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-12143190IPR009057Homeodomain-like
SMARTSM007173.5E-13143193IPR001005SANT/Myb domain
PfamPF002493.7E-12146190IPR001005SANT/Myb domain
CDDcd001679.34E-11146191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSREMGCLSP STYIKDSNWL FEESCGITRW TAEENKMFED ALALFDKDTP DRWCNVAAMI  60
PGKTVNDVIK QYRELVEDIS YIESGLIPIP GYDNTSSTNT SFTLEWINDH DQENNFDDFN  120
KGLYGPSGKR ITSARSSEHE RKKGVPWTEE EHRQFLLGLK KYGKGDWRNI SRNFVTTRTP  180
TQVASHAQKY FIRQLSGGKD KRRSSIHDIT TFNLTETMSP SLDNRTSSSS PDKSAPSPHA  240
HLYSEEYNLP NQEADIAFKP YGQKLHEHDT HSVILQGLQF GQYNYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-2030951176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754498e-56HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802192.11e-159PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-100DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1U7YDJ41e-157A0A1U7YDJ4_NICSY; transcription factor DIVARICATA-like
STRINGXP_009802192.11e-158(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-106MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]