PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00013g00429.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Dof

Protein Properties

Length: 471aa MW: 52105.8 Da PI: 4.9248

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00013g00429.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.2	2.7e-36	120	179	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCyynn +++qPr+fC++C+ryWt+GG++rn+PvG+grrknk+ Peaxi162Scf00013g00429.1 120 PDKILPCPRCNSVDTKFCYYNNNNVNQPRHFCRSCQRYWTAGGTMRNLPVGAGRRKNKNF 179 7899*****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	117	177	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-30	122	178	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.801	124	178	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	126	162	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MTCDSEIKLF GKILPVVFPD QYSGAGDSEV VNDEESDSID YQNQEVEKDD VALEFSEGKA 60 EEEDENQMME ESENVKTSLE SENSHGTPTE EDPQTVKSSE TENQQNNAIN SQQKSNLTKP 120 DKILPCPRCN SVDTKFCYYN NNNVNQPRHF CRSCQRYWTA GGTMRNLPVG AGRRKNKNFA 180 SQYRHMSIPE GLLAAGIELP NGFQHQMLKP NGTVLSFGPD LPLSESMTSA LTQAEERAPD 240 VIQNGFYKIE HKNSSCKGGE NGDDCSRGSS ITTSNTMVGE GKSNPHEAVM HNANSFSPPV 300 PCLRGVPWPF PWNAVVPMSA ISPIGFPMPF YPAPYWNCSV PPWSIPWLSP PPQPENEKAS 360 NCAPNSALGK HSREGDLLKP NNSDGKETSE QRNSERTILV PKTLRIDDPE EAAKSSIWST 420 LGIKYDSASR GKFFKALQPK SDDKENRTNV SPVLHTNPAA LSRSLIFQEK A

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MTCDSEIKLF GKILPVVFPD QYSGAGDSEV VNDEESDSID YQNQEVEKDD VALEFSEGKA  60
EEEDENQMME ESENVKTSLE SENSHGTPTE EDPQTVKSSE TENQQNNAIN SQQKSNLTKP  120
DKILPCPRCN SVDTKFCYYN NNNVNQPRHF CRSCQRYWTA GGTMRNLPVG AGRRKNKNFA  180
SQYRHMSIPE GLLAAGIELP NGFQHQMLKP NGTVLSFGPD LPLSESMTSA LTQAEERAPD  240
VIQNGFYKIE HKNSSCKGGE NGDDCSRGSS ITTSNTMVGE GKSNPHEAVM HNANSFSPPV  300
PCLRGVPWPF PWNAVVPMSA ISPIGFPMPF YPAPYWNCSV PPWSIPWLSP PPQPENEKAS  360
NCAPNSALGK HSREGDLLKP NNSDGKETSE QRNSERTILV PKTLRIDDPE EAAKSSIWST  420
LGIKYDSASR GKFFKALQPK SDDKENRTNV SPVLHTNPAA LSRSLIFQEK A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761438.1	0.0	PREDICTED: cyclic dof factor 3-like
Refseq	XP_016484450.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A1S4B676	0.0	A0A1S4B676_TOBAC; cyclic dof factor 3-like
TrEMBL	A0A1U7V4X6	0.0	A0A1U7V4X6_NICSY; cyclic dof factor 3-like
STRING	XP_009761438.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	6e-84	cycling DOF factor 3