PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00013g00084.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | Dof | ||||||||
Protein Properties | Length: 303aa MW: 32831.9 Da PI: 6.9891 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.4 | 7.4e-39 | 34 | 91 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s Peaxi162Scf00013g00084.1 34 QALKCPRCDSINTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRS 91 789****************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-26 | 24 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-33 | 35 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.646 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 38 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MQDIQAIGGG GARFFGGGGG GDRRLRPNNQ HNLQALKCPR CDSINTKFCY YNNYNLSQPR 60 HFCKSCRRYW TKGGVLRNVP VGGGCRKSKR SKPKSNPTTT TDVVVDGSEE PKSNSHSSSE 120 SSSLTATTTA AAANTGTTSS SATAAAEVVS ASSSNVSSAM FLNFSESNFF VPNSTNSGFD 180 HHHHQPALID HATEGQMFQD IGNFTNLMTP SNDPGSFNMV EIPAWNHQHS KMDMETDHVK 240 MEQMGGNSSG FMSQTSRVGH NSEGGALDWQ IGHGLYDLTG TVDQSYWSQT QWGENDQSLN 300 FLP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241613.1 | 3e-96 | dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A3Q7HTR9 | 8e-94 | A0A3Q7HTR9_SOLLC; Uncharacterized protein | ||||
STRING | XP_009779672.1 | 9e-94 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 2e-33 | OBF binding protein 4 |