PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00012g00295.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 440aa    MW: 49486.5 Da    PI: 5.2909
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00012g00295.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.25.6e-89434301374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.. 83 
                               l++lLl+cA a++++d +laq++++ l++ as+ gdp+qRl++ f++AL +r +r +++ ++    s+ +     + +++++l  
  Peaxi162Scf00012g00295.1  43 LEKLLLHCASALENNDVTLAQQVMWVLNNVASSMGDPNQRLTSWFLRALISRATRVCPTAMNFHGGSNIE----RRLMSVTELag 123
                               5799***************************************************777777655555444....33333344456 PP

                      GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerL 165
                               ++++ P+++f++ + N+aI++a+eg  +vHi+D++i++++QWp+L++aLa+Rpegpp+lRi + +   ++    + ++ee+g+rL
  Peaxi162Scf00012g00295.1 124 YVDLIPWHRFGFCASNSAIYKAIEGRAMVHILDLSITHCMQWPTLIDALAKRPEGPPTLRISVPSWRPQVpplLNVSIEEVGQRL 208
                               **************************************************************98875555889999********* PP

                      GRAS 166 akfAeelgvpfefnvl...........vak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvksls 235
                               ++fA+  +vpfef+vl           + +  l++l  ++L++k +E+l+Vn++  l +l++e+   ++   +rd +L+ +k+l+
  Peaxi162Scf00012g00295.1 209 TNFAKFRDVPFEFQVLenllpessstfHYDiLLSQLCSSSLQCKDDEVLVVNCQNWLRYLPNEQNGNPHdlsCRDIFLDKIKELN 293
                               ****************9999987776644446677788999********************999888777779************ PP

                      GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                               P ++ vv++++d++++s+  r++ +++y +  fd+le+ lp++s +r  +E+  +g++i+n++a eg++r+er e+  +  +r++
  Peaxi162Scf00012g00295.1 294 PCILAVVDEDSDLGTSSLTSRITTCFNYLWIHFDALETFLPKDSGQRLDYEAD-IGQKIENLIAFEGNQRIERLESGINFTQRMK 377
                               *****************************************************.******************************* PP

                      GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++GF ++p+ e++ +++k+ll +++  g+ +++ ++ lvl+Wk+++ v ++aW+
  Peaxi162Scf00012g00295.1 378 NCGFLSIPFCEETITEVKSLLDEHA-SGWGMKKADDMLVLTWKGHNSVYATAWE 430
                               *************************.899************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.91117411IPR005202Transcription factor GRAS
PfamPF035141.9E-8643430IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MKTELRGNST TISLQNPTLF NNPQSSLAGA LKGCIGSLDG ACLEKLLLHC ASALENNDVT  60
LAQQVMWVLN NVASSMGDPN QRLTSWFLRA LISRATRVCP TAMNFHGGSN IERRLMSVTE  120
LAGYVDLIPW HRFGFCASNS AIYKAIEGRA MVHILDLSIT HCMQWPTLID ALAKRPEGPP  180
TLRISVPSWR PQVPPLLNVS IEEVGQRLTN FAKFRDVPFE FQVLENLLPE SSSTFHYDIL  240
LSQLCSSSLQ CKDDEVLVVN CQNWLRYLPN EQNGNPHDLS CRDIFLDKIK ELNPCILAVV  300
DEDSDLGTSS LTSRITTCFN YLWIHFDALE TFLPKDSGQR LDYEADIGQK IENLIAFEGN  360
QRIERLESGI NFTQRMKNCG FLSIPFCEET ITEVKSLLDE HASGWGMKKA DDMLVLTWKG  420
HNSVYATAWE LSSMRDKFTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B5e-571642965472Protein SHORT-ROOT
5b3h_B2e-571642911418Protein SHORT-ROOT
5b3h_E2e-571642911418Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631267.10.0PREDICTED: scarecrow-like protein 32
RefseqXP_016470348.10.0PREDICTED: scarecrow-like protein 32, partial
TrEMBLA0A1S4A1320.0A0A1S4A132_TOBAC; scarecrow-like protein 32
STRINGXP_009631267.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-121GRAS family protein