PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00011g01847.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ARF | ||||||||
Protein Properties | Length: 637aa MW: 71366.5 Da PI: 6.1331 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.3 | 8.8e-11 | 127 | 195 | 1 | 64 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkG 64 f+k+lt sd++++g +++ +++a+e+ +++ ++l+ d++g++W +++i+r++++r++lt+G Peaxi162Scf00011g01847.1 127 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQQP--PWQELVASDLHGNEWHFRHIFRGQPRRHLLTTG 195 99****************************964333..4459***************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-30 | 116 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-8 | 125 | 207 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.4E-23 | 125 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0057 | 127 | 209 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-9 | 127 | 195 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-30 | 239 | 313 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.3E-7 | 514 | 557 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.711 | 521 | 614 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.77E-12 | 523 | 598 | No hit | No description |
Pfam | PF02309 | 2.5E-6 | 566 | 611 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MAHLAANHFG GGTHPGAPND ALYKELWHAC AGPLVTVPRE GERVYYYPQG HMEQLEASTH 60 QGLDQQLPSF NLPAKILCKV MNIHLRAEPD TDEVYAQITL HPEQDQGEIT SPDPPLPEPQ 120 KCTIHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ QPPWQELVAS DLHGNEWHFR 180 HIFRGQPRRH LLTTGGENGE LRVGVRRLMR QLNNMPSSVI SICIWVSSQL HLMPSRLGPP 240 FSVFHKPMTS QSEFIVSVNK YLEARNHKLS VGMRFKMRFE GEEVPERRFS GTIVGVGDNT 300 SSRWLDSEWR SLKVHWDEPS SILRPDRVSP WEMEPLVTAT PTNTQPPQRN KRARPPVLPS 360 PVQELPALGM WKSPVDSPSA FSYCDPSRGR DLYPSPKLSS AAKGLGYAEN GSTPLSSKSM 420 YWSSQSETCT ESVAPASEKR QANGYRLFGI ELLDRPTIDE TSSIAMPSAV IEDQPAPSVD 480 VDSEQNSEPS NPTRSEVPSV SCEPEKSSLR SPHESQSKQI RSCTKVHMQG KAVGRAVDLT 540 RLDSYEDLLK KLEEMFEIEG ELCGSTKKWQ VVYTDDEDDM MMVGDDPWHE FCSMVRKIYV 600 YTVEEAKRLS PKIKLPVDEV KPGKPVSDAT VNNEDKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 0.0 | 4 | 336 | 1 | 355 | Auxin response factor 1 |
4ldy_B | 0.0 | 4 | 336 | 1 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013711 | 0.0 | BT013711.1 Lycopersicon esculentum clone 132555F, mRNA sequence. | |||
GenBank | HM061154 | 0.0 | HM061154.1 Solanum lycopersicum auxin response factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009627009.1 | 0.0 | PREDICTED: auxin response factor 1 | ||||
Refseq | XP_009627014.1 | 0.0 | PREDICTED: auxin response factor 1 | ||||
Refseq | XP_009627020.1 | 0.0 | PREDICTED: auxin response factor 1 | ||||
Refseq | XP_009627027.1 | 0.0 | PREDICTED: auxin response factor 1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A1S4CGQ2 | 0.0 | A0A1S4CGQ2_TOBAC; Auxin response factor | ||||
STRING | XP_009627009.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5838 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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