PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00011g00209.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 304aa MW: 34147.7 Da PI: 7.77 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.6 | 5.5e-32 | 75 | 132 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 + vrYkeClkNhAa++Gg+a+DGCgEfmps geegt +al C+AC+CHRnFHR+e e e Peaxi162Scf00011g00209.1 75 KMVRYKECLKNHAATMGGNATDGCGEFMPS-GEEGTLEALICSACNCHRNFHRKEIEGE 132 679**************************9.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.9E-29 | 77 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-25 | 77 | 132 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.8E-31 | 78 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.278 | 79 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-30 | 222 | 291 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.13E-19 | 222 | 290 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.7E-27 | 229 | 285 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MELPNQEEEM PLPINSTYVG GVHQHGHGHI IHHDPTPPNS NTNHIIPSSV APPSMNGPPI 60 DAAPVASDHH LPYKKMVRYK ECLKNHAATM GGNATDGCGE FMPSGEEGTL EALICSACNC 120 HRNFHRKEIE GEQQLLQQQA LPSPCDYYHL NRVGKKVYLG SHHHKSLLGP ESFGTIIPSR 180 PAPHQMIMSY NMGSLPNSES EEHEDGLGNG GVMAMAMARP LHHHHQNVKK RFRTKFTQEQ 240 KEKMLNFAEK VGWKIQKQEE AVVQQFCQEV GVKRRVLKVW MHNNKHNLAK KNNDSNNIIP 300 QDHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-24 | 230 | 287 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 8e-56 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 8e-56 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613099.1 | 1e-165 | PREDICTED: zinc-finger homeodomain protein 4 | ||||
Refseq | XP_016501840.1 | 1e-165 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_016501841.1 | 1e-165 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_018629726.1 | 1e-165 | PREDICTED: zinc-finger homeodomain protein 4 | ||||
Swissprot | Q9M9S0 | 7e-76 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A1S4CL46 | 1e-164 | A0A1S4CL46_TOBAC; zinc-finger homeodomain protein 4-like | ||||
STRING | XP_009613099.1 | 1e-164 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5154 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-70 | homeobox protein 31 |