PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00010g00269.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HSF
Protein Properties Length: 403aa    MW: 45907.3 Da    PI: 6.8238
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00010g00269.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.6e-35251172103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F
  Peaxi162Scf00010g00269.1  25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDYF 100
                               9*****************************************************************99.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                               k+ +k+ll++i+r+k++
  Peaxi162Scf00010g00269.1 101 KRAEKHLLCEIHRRKTA 117
                               **************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3716109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.3E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.7E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MALMVDNCEG LLLSLESHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDYF KRAEKHLLCE IHRRKTAHPQ  120
VAMNHHDQHH YPLNQYLMNA PNFIHYPNRL SISPPDSDEQ QSNWCDDSPA TRASSTGCDA  180
INGNSGSYNY CVTALSEDNE RLRRSNNILT SELAHMRKLY SDIIYFVQNH VKPVAPSNTY  240
SSSLVQKPLN QLNNCQQTKL KQGNNAVGLL NDSQSKTSQS SLTKLFGVPL QSKKRVHPEF  300
SSPSMEINKA RLVLEKDNLG LNLMPPSPLH YFCSIPSPNH ECRSHEHEEE LENTEVTPPQ  360
HLSYSAEASS SKGTTGAAKK LQLSEVLRKE EEINEKTQLE SKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-222011625131Heat shock factor protein 1
5d5v_B7e-222011625131Heat shock factor protein 1
5d5v_D7e-222011625131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022879895.11e-166heat stress transcription factor B-4-like
SwissprotQ9C6351e-108HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA5APA71e-161A5APA7_VITVI; Uncharacterized protein
STRINGVIT_18s0001g10380.t011e-161(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-107heat shock transcription factor B4