PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00009g00022.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 404aa    MW: 47046.8 Da    PI: 5.8039
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00009g00022.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.8e-18188234148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WTteEd ll+++v+++G + W+ Ia+++  gR +kqc++rw+++l
  Peaxi162Scf00009g00022.1 188 KGQWTTEEDRLLIHLVEKFGVRKWSQIAQMLK-GRIGKQCRERWYNHL 234
                               799****************************9.*************97 PP
2Myb_DNA-binding54.82.2e-17242282345
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                WT++Ed +l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Peaxi162Scf00009g00022.1 242 LWTEDEDRILIEAHAEVGNK-WTEIAKRLP-GRTENSIKNHWN 282
                               6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.824183238IPR017930Myb domain
SMARTSM007171.0E-17187236IPR001005SANT/Myb domain
PfamPF002492.1E-17188234IPR001005SANT/Myb domain
SuperFamilySSF466892.16E-31188281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26189240IPR009057Homeodomain-like
CDDcd001673.77E-15191234No hitNo description
SMARTSM007173.4E-17239287IPR001005SANT/Myb domain
PROSITE profilePS5129422.238239289IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-23241288IPR009057Homeodomain-like
PfamPF002493.3E-16242282IPR001005SANT/Myb domain
CDDcd001676.98E-13243285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEFDHSSNQN LSLQPYNNSL IRGEMDDVFC TVSKDYLQDF HHLDLTFNNP HDNLLIETNG  60
YDSLFDPILN EGNLSSLDHQ DFNLNYEFKP FEQNSASGST LVMKNFENSM DMHTSNDENL  120
LSLCSEDMKP LSFVNVQDES SCITADNNYY DNKICRRKKN KKVSSKENIL SPCMGKLGKG  180
KKKSKSAKGQ WTTEEDRLLI HLVEKFGVRK WSQIAQMLKG RIGKQCRERW YNHLRPDIKK  240
DLWTEDEDRI LIEAHAEVGN KWTEIAKRLP GRTENSIKNH WNATKRRQFS RRKCRTKWAR  300
PSCLLQNYIK SLNFEKSIRS SHDTTINAPK QEPFGNIPDY DLTSEVPEFA FDDKLFDENI  360
NMDALMDQIH DRCLDLEIPY DELPKLMQGD ANKEPDSIDL ISEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-441882884104C-Myb DNA-Binding Domain
1msf_C7e-441882884104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469577.11e-161PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L27e-78MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A1S3ZYR71e-160A0A1S3ZYR7_TOBAC; transcription factor MYB98-like
STRINGXP_009595322.11e-146(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-75myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]