PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00008g00428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 220aa MW: 25592.8 Da PI: 5.4893 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 8e-20 | 56 | 109 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Peaxi162Scf00008g00428.1 56 KRKLSDEQVNLLEQSFGDEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKN 109 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 120.6 | 8.1e-39 | 55 | 146 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kr+ls+eqv+lLE+sF e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ +++rLe+ev + Peaxi162Scf00008g00428.1 55 RKRKLSDEQVNLLEQSFGDEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKNEHDTNIVDKCRLENEVLK 139 8************************************************************************************ PP HD-ZIP_I/II 87 Lreelke 93 L+e+l++ Peaxi162Scf00008g00428.1 140 LKEQLSD 146 ***9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.957 | 50 | 110 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.0E-20 | 53 | 114 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.18E-18 | 55 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.09E-17 | 55 | 111 | No hit | No description |
Pfam | PF00046 | 6.5E-17 | 56 | 109 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-21 | 57 | 117 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.0E-6 | 81 | 90 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 85 | 108 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.0E-6 | 90 | 106 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSTSSMNNHQ VDEQMLLISQ YYPGIYTQQL PQQGEVKPRR RRKKNKGGEE TGIMRKRKLS 60 DEQVNLLEQS FGDEHKLESE RKDKLASELG LDPRQVAVWF QNRRARWKNK KLEEEYSKLK 120 NEHDTNIVDK CRLENEVLKL KEQLSDAEKE IQRLLMEKPD GVYSSNSPST SSLSMEAIEP 180 PFLGEFGMGG LDINNGFYVP ENTYAQGLEW VNLYNIPYDM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 57 | RRRKKNKGGEETGIMRKRK |
2 | 41 | 57 | RKKNKGGEETGIMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016504930.1 | 1e-111 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 5e-80 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A1S4CUX7 | 1e-110 | A0A1S4CUX7_TOBAC; homeobox-leucine zipper protein ATHB-40-like | ||||
STRING | XP_009775418.1 | 1e-109 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 7e-75 | homeobox protein 40 |
Publications ? help Back to Top | |||
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