PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00007g02122.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 269aa    MW: 30664.2 Da    PI: 8.0057
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00007g02122.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g WT+eEd +l+ +v++ G  +W+  +++ g+ R++k+c++rw +yl
  Peaxi162Scf00007g02122.1 14 KGTWTPEEDRKLAAYVTKNGCLNWRQLPKHAGLARCGKSCRLRWMNYL 61
                              799*******************************************97 PP
2Myb_DNA-binding55.41.4e-1767110146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+ T eEd +++++++qlG++ W++Ia++++ gR+++++k++w++
  Peaxi162Scf00007g02122.1  67 RGNYTNEEDGIILKLHTQLGNR-WSAIAAHLP-GRSDNDIKNHWHT 110
                               899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.967961IPR017930Myb domain
SuperFamilySSF466893.13E-2911108IPR009057Homeodomain-like
SMARTSM007173.1E-111363IPR001005SANT/Myb domain
PfamPF002496.5E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-231568IPR009057Homeodomain-like
CDDcd001671.23E-91661No hitNo description
PROSITE profilePS5129424.68962116IPR017930Myb domain
SMARTSM007173.9E-1566114IPR001005SANT/Myb domain
PfamPF002491.0E-1467110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2569115IPR009057Homeodomain-like
CDDcd001672.03E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVRTPCRDEY GRKKGTWTPE EDRKLAAYVT KNGCLNWRQL PKHAGLARCG KSCRLRWMNY  60
LRPNVKRGNY TNEEDGIILK LHTQLGNRWS AIAAHLPGRS DNDIKNHWHT SLKKRANYES  120
SKKYNKNRES TNTKNQASSR RKSTVENENA SSLSCSMSTH ETILEGSQWS LKQSSSEEIS  180
SCTADYQQLD IASDIREVKV FEEEAYVAES CGSFWTEPFV VDSFSSRLHD CVAPSIDFEL  240
VSPPSPFIGH GFISSFNLDD YLMLSSLFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29141177109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754465e-35HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454046.11e-122PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1S3YP581e-120A0A1S3YP58_TOBAC; myb-related protein Myb4-like
STRINGXP_009624516.11e-120(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-55myb domain protein 15