PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00007g01333.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 300aa    MW: 34860.9 Da    PI: 9.6624
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00007g01333.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.68e-24959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k+ien++ rq t+skR+ gi KKA+EL vLCd++va+++fs+tg+l  yss
  Peaxi162Scf00007g01333.1  9 KKIENSTSRQQTYSKRKDGIVKKANELAVLCDTDVALLMFSPTGQLTSYSS 59
                              68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.24161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-26275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-21323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRNKLVMKK IENSTSRQQT YSKRKDGIVK KANELAVLCD TDVALLMFSP TGQLTSYSSR  60
GSVEDIMLRV VNRPGELNRR FIPDEQHMSQ RLTQLKYEGE MVEKIAMYVP LLLHSFHLPG  120
LWFPYSVSEP VIRTTNYALR QVRENKKLTS KTCTRNGVWA HEEKLNKLAR RLREAREKLR  180
YYEPRMEEIN SVEEAVACQQ FLMSALERIQ QSKAKLLGSE EFIQRNENVE VASVNAEDSA  240
DASNRAAYSN RKCNLSLAFH IYMCFEFFVV QFLKLFNSIS EKRNSVRDES YEKQTGPRLH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439170.11e-103PREDICTED: agamous-like MADS-box protein AGL66 isoform X2
TrEMBLA0A1S3XGT11e-102A0A1S3XGT1_TOBAC; agamous-like MADS-box protein AGL66 isoform X2
STRINGXP_009776411.11e-101(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.29e-24AGAMOUS-like 67