PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00007g00823.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 517aa    MW: 57246.9 Da    PI: 5.3224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00007g00823.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-163077148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+ Ed +l ++vk++G g+W+++ r  g+ R++k+c++rw ++l
  Peaxi162Scf00007g00823.1 30 KGPWTAAEDSILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 77
                              79******************************************9986 PP
2Myb_DNA-binding49.69.1e-1683126146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +g++T eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++
  Peaxi162Scf00007g00823.1  83 KGAFTVEEERIIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 126
                               799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5982577IPR017930Myb domain
SMARTSM007173.8E-132979IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-3029124IPR009057Homeodomain-like
PfamPF002491.6E-143077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-233184IPR009057Homeodomain-like
CDDcd001675.33E-113277No hitNo description
PROSITE profilePS5129426.35178132IPR017930Myb domain
SMARTSM007172.9E-1682130IPR001005SANT/Myb domain
PfamPF002491.0E-1483126IPR001005SANT/Myb domain
CDDcd001671.29E-1185128No hitNo description
Gene3DG3DSA:1.10.10.604.7E-2585131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MAPDDRGMKN GGASTGRSNG AGSSRQVLKK GPWTAAEDSI LMEYVKKHGE GNWNAVQRNS  60
GLMRCGKSCR LRWANHLRPN LKKGAFTVEE ERIIIELHAK LGNKWARMAA QLPGRTDNEI  120
KNYWNTRLKR RQRAGLPIYP QELQQQNQHE NNNQPHSLLS SSYDPQNSTN YNSPSLSLLD  180
IFNPSTMKPS ITQQFPINTP SLCLPSTNNN NIFRNTPKGL SLTLPSSMRN SQFSSLPNNN  240
FTQGLSSNSI QVPPFQHNYP NFNINRPFTG ISSNPNGLIC GMGINTINYP SGQSSMPVTA  300
SSSENTGSDF GSSDNANNYA NTNGLSRGNS GLLEDLLEES QTLNRPGMKI EDNFLDLKED  360
QEADYKGKSM LWEDYGLVED AEEAILTEES AYSFAHGVDH VAQNKNSESS SPHSPPNSSS  420
GIFMKKEDSF HGTNQADDDI MCLLDNFPLA VPVPEWYEDE DDKNNCNGQS SNVTNCDHIA  480
ENQAEDSKSP ALTLNSGTRN HDWEFGGCCW NNMPSFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30281315107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ139980.0Z13998.1 P.hybrida myb.Ph3 gene encoding protein 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016446856.10.0PREDICTED: transcription factor RAX3
TrEMBLQ029940.0Q02994_PETHY; Protein 3
STRINGXP_009592281.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.11e-69myb domain protein 101