PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00007g00207.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 263aa    MW: 30337.9 Da    PI: 7.357
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00007g00207.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-131476148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...............TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...............kgRtlkqcksrwqkyl 48
                              +g WT+eEd +l+ +v+++G  +W+  +++ g               + R++k+c++rw +yl
  Peaxi162Scf00007g00207.1 14 KGTWTPEEDRKLAAYVTKYGCWNWRQLPKYAGenfctiytniapregLARCGKSCRLRWMNYL 76
                              799*****************99***************************************97 PP

2Myb_DNA-binding57.14.3e-1882125146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+ T+eEde++++++++lG++ W++Ia+ ++ gR+++++k++w++
  Peaxi162Scf00007g00207.1  82 RGNYTKEEDEIILKLHAELGNR-WSAIAAQLP-GRSDNEIKNHWHT 125
                               899*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.296976IPR017930Myb domain
SuperFamilySSF466892.92E-2711123IPR009057Homeodomain-like
SMARTSM007174.6E-81378IPR001005SANT/Myb domain
PfamPF002492.8E-121476IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-231583IPR009057Homeodomain-like
CDDcd001671.23E-61676No hitNo description
PROSITE profilePS5129426.48777131IPR017930Myb domain
SMARTSM007171.3E-1781129IPR001005SANT/Myb domain
PfamPF002491.7E-1682125IPR001005SANT/Myb domain
CDDcd001675.80E-1284127No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2684130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVRTPCCDEN GRKKGTWTPE EDRKLAAYVT KYGCWNWRQL PKYAGENFCT IYTNIAPREG  60
LARCGKSCRL RWMNYLRPNV KRGNYTKEED EIILKLHAEL GNRWSAIAAQ LPGRSDNEIK  120
NHWHTSLKKR ANYGPNSSES SKKCNKNSES KRKRVENQNA SHETILESSH MSPKQSIGEE  180
LCSNTTDYKQ QDVASVIREE ELYYEEALAE ISGNFWTEPF LLDSFSNRFD FRAPSIDCGL  240
VCPPSPFIGH ELLSSFDFDD SNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141327109B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754462e-46HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454046.11e-128PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1S3YP581e-127A0A1S3YP58_TOBAC; myb-related protein Myb4-like
STRINGXP_009624516.11e-127(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-52myb domain protein 15