PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00006g00075.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27320.1 Da PI: 6.69 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.3 | 4.1e-13 | 15 | 49 | 7 | 41 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifs 41 s r+ + kR + ++KKAeE S+LCd+++aviif Peaxi162Scf00006g00075.1 15 SVRNSILNKRAASLFKKAEEFSILCDVKIAVIIFK 49 55666689*************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.834 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.40E-15 | 2 | 84 | No hit | No description |
SuperFamily | SSF55455 | 9.55E-17 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-12 | 13 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MTRKRLNHTR NCSESVRNSI LNKRAASLFK KAEEFSILCD VKIAVIIFKP GEVEPIVWPS 60 LNQAKDIITR YLLSSETERL KKLVRHETYL LEKVKAQEEN IIKIEKMNEE KEIELLFNQL 120 MEGKSINELD ARQLKGLLNL SATKMAKLAE RKKQLNQQNH PNVKPANENE NGAQSDGLPN 180 VMQSTSLMED WINDIWFIET MAANHNDLGF ESGSGPKLAL TEGNDNNVGE NRDGHPKNLD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794692.1 | 7e-99 | PREDICTED: MADS-box protein AGL24-like | ||||
Refseq | XP_016468130.1 | 7e-99 | PREDICTED: MADS-box protein AGL71-like | ||||
TrEMBL | A0A1S3ZUN3 | 2e-97 | A0A1S3ZUN3_TOBAC; MADS-box protein AGL71-like | ||||
TrEMBL | A0A1U7XRI7 | 2e-97 | A0A1U7XRI7_NICSY; MADS-box protein AGL24-like | ||||
STRING | XP_009794692.1 | 3e-98 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 8e-19 | M-type_MADS family protein |