PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00004g02328.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 346aa    MW: 38676.3 Da    PI: 5.9174
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00004g02328.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68.1e-152976148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W++eEde+l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  Peaxi162Scf00004g02328.1 29 KGLWSPEEDEKLMHYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 76
                              678*******************************************97 PP
2Myb_DNA-binding54.92e-1782126147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg+++++E+el+++++ +lG++ W+ Ia++m+ gRt++++k++w++ 
  Peaxi162Scf00004g02328.1  82 RGAFSPQEEELIIHLHSLLGNR-WSQIAARMP-GRTDNEIKNFWNST 126
                               89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9612476IPR017930Myb domain
SuperFamilySSF466891.41E-2826123IPR009057Homeodomain-like
SMARTSM007171.4E-102878IPR001005SANT/Myb domain
PfamPF002491.7E-132976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-233083IPR009057Homeodomain-like
CDDcd001675.80E-93276No hitNo description
PROSITE profilePS5129426.43277131IPR017930Myb domain
SMARTSM007179.6E-1781129IPR001005SANT/Myb domain
PfamPF002495.5E-1682126IPR001005SANT/Myb domain
CDDcd001674.96E-1284127No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2684132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MRKPEFSSSG KNGTNSNNNI NNANMKLRKG LWSPEEDEKL MHYMLTNGQG CWSDVARNAG  60
LQRCGKSCRL RWINYLRPDL KRGAFSPQEE ELIIHLHSLL GNRWSQIAAR MPGRTDNEIK  120
NFWNSTLKKR LKNSSSCSTP SPNASDSSSE PCKDNLNMGI NQGLIMSMQN HNLMSMFMDS  180
TSSSSSSMAL NTIIEPLPML EQTLINMPNG LSAPPYLTTQ PCMTQGRSIV TNGSLFYGNN  240
HGIFGGNLGM EGELYIPPLE SVSIHEYQNV ENGNLVERSS QNNNNPTNSM TNLTSHFNSS  300
SNNIKVENFG GVGNYWEGDE LKVGEWDLEE LMKDVSPFPF LDFQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-262413122128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609673.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A1U7VJX70.0A0A1U7VJX7_NICSY; transcription factor MYB46-like
STRINGXP_009609673.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-66myb domain protein 83