PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00004g00092.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

GRAS

Protein Properties

Length: 655aa MW: 74050.3 Da PI: 6.6228

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00004g00092.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	362	8.3e-111	284	650	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 lL++cAea +s +++ ++L+++++++sp gd ++Rla +f++AL+ar ++ e+ ++++ s s+ l+a++++ ++ Peaxi162Scf00004g00092.1 284 LLTRCAEAAASYNNKTFVEVLKKIRQHSSPFGDGNERLAYCFANALEARFSG--GETNTFSNCKKIS---ASDFLKAYQVYITAC 363 89***********************************************9..3333334666665...89********* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171 P+ ++s++ aN+ I + ++++++vHiiDf+i +G+QWp+L++ ++ Rp+gpp+lRiTg++ p++g +e++eetg+rL+++ ++ Peaxi162Scf00004g00092.1 364 PFKRMSNIFANKSIAKLTSEATKVHIIDFGILYGFQWPCLIHGISLRPGGPPKLRITGIDFPQPGfrPAERVEETGRRLENYSKR 448 ************************************************************9**************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 ++vpfe+++ +akr+++++l++L+++++E ++Vn+ ++l++++de+vs +++rd+vL+l+k+++P+ +v+ +a +n++ F +r Peaxi162Scf00004g00092.1 449 FNVPFEYKA-IAKRWDAITLKDLNIEKDEIVVVNCLYRLKNIPDETVSDKNPRDAVLNLIKQINPRYFVHGVVNAMYNASFFTTR 532 *****.7********************************************************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 f eal ++s+ fd++ea+++re+e r++ E+e++gr+i+nv+aceg+er+er e++++W+ r + aGFk +pl+++++k++k+ + Peaxi162Scf00004g00092.1 533 FREALFHFSSQFDMFEATMAREDEGRRMFEQEIFGRDIMNVIACEGTERVERPESYKQWQVRNQIAGFKRLPLNQDIVKEVKAKV 617 ********************************************************************************* PP GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ + + + v+e+s+++++gWk+r ++++S+W+ Peaxi162Scf00004g00092.1 618 KMAYHRDFLVDEDSNWMLQGWKGRIMYALSVWE 650 999***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.487	255	630	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-108	284	650	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MMNNTLFSLA DHNSCGGFEF GHHFLSASTT LSSNLGSGFS DEVVDGGSRV VESDYFDGVF 60 KYIQQMLMEE DDLESRPCMF QDCMALQAAE KSFYDALTQK NDFINDDCNA MTQFVESNFI 120 TSDLGGPQSF LEQQESLFCY PCDGALSDIL LNPPLNNNTH KAAANGGDAV VPATNQGGNS 180 SSKRSSEGKK NHNREDGDQY SSEGRNPKQF ASTYVAEPGH TEGYDKALLC PAMSPSFYEE 240 SSDSENVAWN KQKSCHLKES KRGRPRGSKK GAKTTNEVVD LTCLLTRCAE AAASYNNKTF 300 VEVLKKIRQH SSPFGDGNER LAYCFANALE ARFSGGETNT FSNCKKISAS DFLKAYQVYI 360 TACPFKRMSN IFANKSIAKL TSEATKVHII DFGILYGFQW PCLIHGISLR PGGPPKLRIT 420 GIDFPQPGFR PAERVEETGR RLENYSKRFN VPFEYKAIAK RWDAITLKDL NIEKDEIVVV 480 NCLYRLKNIP DETVSDKNPR DAVLNLIKQI NPRYFVHGVV NAMYNASFFT TRFREALFHF 540 SSQFDMFEAT MAREDEGRRM FEQEIFGRDI MNVIACEGTE RVERPESYKQ WQVRNQIAGF 600 KRLPLNQDIV KEVKAKVKMA YHRDFLVDED SNWMLQGWKG RIMYALSVWE PVHRS

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MMNNTLFSLA DHNSCGGFEF GHHFLSASTT LSSNLGSGFS DEVVDGGSRV VESDYFDGVF  60
KYIQQMLMEE DDLESRPCMF QDCMALQAAE KSFYDALTQK NDFINDDCNA MTQFVESNFI  120
TSDLGGPQSF LEQQESLFCY PCDGALSDIL LNPPLNNNTH KAAANGGDAV VPATNQGGNS  180
SSKRSSEGKK NHNREDGDQY SSEGRNPKQF ASTYVAEPGH TEGYDKALLC PAMSPSFYEE  240
SSDSENVAWN KQKSCHLKES KRGRPRGSKK GAKTTNEVVD LTCLLTRCAE AAASYNNKTF  300
VEVLKKIRQH SSPFGDGNER LAYCFANALE ARFSGGETNT FSNCKKISAS DFLKAYQVYI  360
TACPFKRMSN IFANKSIAKL TSEATKVHII DFGILYGFQW PCLIHGISLR PGGPPKLRIT  420
GIDFPQPGFR PAERVEETGR RLENYSKRFN VPFEYKAIAK RWDAITLKDL NIEKDEIVVV  480
NCLYRLKNIP DETVSDKNPR DAVLNLIKQI NPRYFVHGVV NAMYNASFFT TRFREALFHF  540
SSQFDMFEAT MAREDEGRRM FEQEIFGRDI MNVIACEGTE RVERPESYKQ WQVRNQIAGF  600
KRLPLNQDIV KEVKAKVKMA YHRDFLVDED SNWMLQGWKG RIMYALSVWE PVHRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-47	287	651	24	379	Protein SCARECROW
5b3h_D	2e-47	287	651	24	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798121.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A1U7Y860	0.0	A0A1U7Y860_NICSY; scarecrow-like protein 30
STRING	XP_009798121.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-170	GRAS family protein