PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00003g04342.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | SBP | ||||||||
Protein Properties | Length: 366aa MW: 39420.5 Da PI: 9.0901 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.6 | 3.1e-42 | 75 | 150 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls+ak y++rhkvC++hsk+p+v+v gleqrfCqqCsrfh+l efD++krsCrrrLa hnerrrk+ Peaxi162Scf00003g04342.1 75 RCQVEGCQVDLSNAKAYYSRHKVCSMHSKSPTVVVGGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLACHNERRRKP 150 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.3E-36 | 69 | 137 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.231 | 73 | 150 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.46E-40 | 74 | 153 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.7E-32 | 76 | 149 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MELSSVSSSS NSSSSDSLNG LKFGKKIYFG NVGIGVEAKK ESVSLPVTGT DHLPPAPVMS 60 KRGRSGMVQG GQPPRCQVEG CQVDLSNAKA YYSRHKVCSM HSKSPTVVVG GLEQRFCQQC 120 SRFHQLPEFD QGKRSCRRRL ACHNERRRKP PSGSLFSAHY GSLSSSTFEN NSSRSSSILL 180 DFSSSPKLNE SSWPNTRESE QGWDHQSTGS GKFLQRPWLN SSESATSEII LQGSATRTSY 240 PGPGVPSGDC FPGASGSSGA LSLLSNRSWE SRNRPSSLVN IDGVPTIQPS SSHGAPTNHF 300 SRPSLGFKGN EASSSSHEMP PDLGLGQMTH AANNQYSSEL GMAQHMELDH SKGGYHASVQ 360 NVHWTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-30 | 76 | 149 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362236.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A2K9ZY74 | 0.0 | A0A2K9ZY74_PETHY; Squamosa promoter binding-like protein 9b | ||||
STRING | PGSC0003DMT400029751 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4571 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57920.1 | 2e-45 | squamosa promoter binding protein-like 15 |