PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g04342.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family SBP
Protein Properties Length: 366aa    MW: 39420.5 Da    PI: 9.0901
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g04342.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.63.1e-4275150176
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                               +CqvegC++dls+ak y++rhkvC++hsk+p+v+v gleqrfCqqCsrfh+l efD++krsCrrrLa hnerrrk+
  Peaxi162Scf00003g04342.1  75 RCQVEGCQVDLSNAKAYYSRHKVCSMHSKSPTVVVGGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLACHNERRRKP 150
                               6*************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.3E-3669137IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.23173150IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-4074153IPR004333Transcription factor, SBP-box
PfamPF031106.7E-3276149IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MELSSVSSSS NSSSSDSLNG LKFGKKIYFG NVGIGVEAKK ESVSLPVTGT DHLPPAPVMS  60
KRGRSGMVQG GQPPRCQVEG CQVDLSNAKA YYSRHKVCSM HSKSPTVVVG GLEQRFCQQC  120
SRFHQLPEFD QGKRSCRRRL ACHNERRRKP PSGSLFSAHY GSLSSSTFEN NSSRSSSILL  180
DFSSSPKLNE SSWPNTRESE QGWDHQSTGS GKFLQRPWLN SSESATSEII LQGSATRTSY  240
PGPGVPSGDC FPGASGSSGA LSLLSNRSWE SRNRPSSLVN IDGVPTIQPS SSHGAPTNHF  300
SRPSLGFKGN EASSSSHEMP PDLGLGQMTH AANNQYSSEL GMAQHMELDH SKGGYHASVQ  360
NVHWTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-30761491184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362236.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A2K9ZY740.0A0A2K9ZY74_PETHY; Squamosa promoter binding-like protein 9b
STRINGPGSC0003DMT4000297510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.12e-45squamosa promoter binding protein-like 15