PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00003g04231.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 325aa MW: 35689.8 Da PI: 8.3695

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00003g04231.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.8e-13	253	298	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L +Av+YIk+Lq Peaxi162Scf00003g04231.1 253 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 298 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.275	247	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-16	250	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.39E-13	251	300	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.6E-15	252	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-10	253	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	253	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
PSSLFDNFTD GVRKIENKAM VNGFSSTLSS SSSNSQLPPQ YPRQNCTTTA HVGSMDGGYR 60 VMGSNLMRQN SSPAGLFSHL NAQNGYGTLK GGVGGYRMAN GSNGDSISPS SSRSKGHFSF 120 PSGTPSSLGM LSRISEVDNE SSIATVPDEE KCGDGNSEAE FYNPGFPFTS WSDSSQFQDT 180 ITGHRRELDN EGNKLFANAQ IEELGNRPPI LSHHLSLPKT PAELAVMEKL LHFQDTIPCK 240 IRAKRGCATH PRSIAERVRR TRISERMRKL QDLVPNMDKQ TNTADMLDLA VDYIKDLQEQ 300 YKTLSDIRAN CKCSAMQNPV SNRRV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244298	2e-81	AC244298.9 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence.
GenBank	AC244588	2e-81	AC244588.6 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44j8 map 10, complete sequence.
GenBank	HG975449	2e-81	HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBank	HG975522	2e-81	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351215.2	1e-173	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	8e-81	BH130_ARATH; Transcription factor bHLH130
TrEMBL	M1AEJ4	1e-172	M1AEJ4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400021062	1e-173	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	9e-77	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]