PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g03239.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 282aa    MW: 30292 Da    PI: 6.2702
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g03239.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.3e-16194229134
                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++Cg ++  Tp++Rrgpdg+++LCnaCGl ++ kg
  Peaxi162Scf00003g03239.1 194 CRHCGISSksTPMMRRGPDGPRSLCNACGLTWANKG 229
                               *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132010.78886121IPR010399Tify domain
SMARTSM009793.1E-486122IPR010399Tify domain
PfamPF062009.0E-990112IPR010399Tify domain
PROSITE profilePS5101713.374125167IPR010402CCT domain
PfamPF062031.2E-16125167IPR010402CCT domain
SMARTSM004012.0E-11188241IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.275188245IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-12190241No hitNo description
CDDcd002026.75E-14193236No hitNo description
Gene3DG3DSA:3.30.50.105.0E-15193235IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440194221IPR000679Zinc finger, GATA-type
PfamPF003203.5E-14194229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MTSDRHHHFA VVDGGEDDVD TDEITGSGGG ESIDNPPSHH IRYDYHHAHP HALHNNNMEE  60
EAAVDGGVSN HALYVPGSDT VVHGGGGGGS DQLTLSFRGQ VYVFDAVSPE KASGEVPGRL  120
NQPQREASLN RFREKRKERC FDKKIRYTVR KEVALRMQRK KGQFTSSKSV SDEAGSSSAE  180
GNAGSSQEEQ ESSCRHCGIS SKSTPMMRRG PDGPRSLCNA CGLTWANKGI LRDLSKVSTV  240
TVQEYSVKGG DQSNGEVNGS EAMAAAGIIT SDGENTVLTP EH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612271e-136GQ261227.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI008 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616899.11e-124PREDICTED: GATA transcription factor 24-like
RefseqXP_016446080.11e-124PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL78e-67GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S3Y1U51e-123A0A1S3Y1U5_TOBAC; GATA transcription factor 24-like
STRINGXP_009616899.11e-124(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-58ZIM-LIKE 2
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]