PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00002g00162.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 720aa    MW: 79380.5 Da    PI: 6.2438
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00002g00162.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.72.8e-843597193374
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               ++++++ e + +g++++aq +Larl+++ sp g+p++R+a+yf+eAL+   +   + ++  lpp++ ++ + + ++ a+k fsev
  Peaxi162Scf00002g00162.1 359 DQIFQASELLLAGHFSNAQMILARLNQQLSPIGKPFKRAAFYFKEALQLPFLL--PCTSTFLPPRSPTPFDCVLKMDAYKSFSEV 441
                               57899999999*************************************99998..566666899999999*************** PP

                      GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                               sP+++f ++t NqaIlea+   er+HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+  ++e L++fA+  
  Peaxi162Scf00002g00162.1 442 SPLIQFMNFTSNQAILEALGDVERIHIIDFDIGFGAQWSSFMQELPSSNRKATSLKITAFASPSTHHSVEIAIMHESLTQFANDA 526
                               ************************************************************************************* PP

                      GRAS 173 gvpfefnvlvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                               g++fe +v+  ++++  +  l++Lr +  Ea+a+n+ +   +      +     +++L+ +k+lsPk++v  e+ +++++ ++ +
  Peaxi162Scf00002g00162.1 527 GIRFELEVINLDTFDpkSYPLSSLRSSDCEAIAINFPIWSISSC--LFA----FPSLLHYMKQLSPKIIVSLERGCERTELPLKH 605
                               ********97776651145789999999********99555444..344....456***************************** PP

                      GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                               ++l+al+yy  l+ s++a    + e  +k+E+ ll ++i+n+v  + ++      ++  Wr+ + +aGF+pv++s+ ++ qa+++
  Peaxi162Scf00002g00162.1 606 HLLHALQYYEILLASIDAA-NITPEIGKKIEKSLLLPSIENMVLGRLRS----PDRMPPWRNLFASAGFSPVAFSNLTEIQAECV 685
                               ****************766.46889999****************99988....9999**************************** PP

                      GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++++++ g++ve+ + slvl+Wk+++L+s+  Wr
  Peaxi162Scf00002g00162.1 686 VKRTQVGGFHVEKCQSSLVLCWKQQELLSALTWR 719
                               *********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.878331699IPR005202Transcription factor GRAS
PfamPF035149.8E-82359719IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MIAIPQGAKG VLGVSSFMPS ISSEEQICKK DANFTRNDPQ ICKKDGNFAR NEPQICKKEG  60
NFTRNEPVSV LDTRSPSPSS SSCSYAGKVE GQKEELVKEL QPFPLVGLEP EKCSLGFGDL  120
DNLLPELAGA DQTLLRWISG DMEDPSVSLK QLLLGGNANG FHGSSGFEAS AAGSLVHTDN  180
VSFSGSDVSL NANIEKIGSV IDSNGRPSNG FDYLNANLYA KSLPLPPASS FQEQKLGQKP  240
QSFSPNQALF QNASYGNMFE SSYDDTNQEQ PPSKRHNSGT LGSSVGGLLP KVPFFDPSGD  300
LLMRRQLLGE MQQHFNLLPP QQFQPKPLIV PKLEAACGGG NGSLMVPRHQ QQEQQFIYDQ  360
IFQASELLLA GHFSNAQMIL ARLNQQLSPI GKPFKRAAFY FKEALQLPFL LPCTSTFLPP  420
RSPTPFDCVL KMDAYKSFSE VSPLIQFMNF TSNQAILEAL GDVERIHIID FDIGFGAQWS  480
SFMQELPSSN RKATSLKITA FASPSTHHSV EIAIMHESLT QFANDAGIRF ELEVINLDTF  540
DPKSYPLSSL RSSDCEAIAI NFPIWSISSC LFAFPSLLHY MKQLSPKIIV SLERGCERTE  600
LPLKHHLLHA LQYYEILLAS IDAANITPEI GKKIEKSLLL PSIENMVLGR LRSPDRMPPW  660
RNLFASAGFS PVAFSNLTEI QAECVVKRTQ VGGFHVEKCQ SSLVLCWKQQ ELLSALTWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-2736371825378Protein SCARECROW
5b3h_A4e-2736371824377Protein SCARECROW
5b3h_D4e-2736371824377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4819520.0AF481952.1 Petunia x hybrida hairy meristem (HAM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252370.10.0PREDICTED: scarecrow-like protein 22
TrEMBLQ8LL100.0Q8LL10_PETHY; Hairy meristem
STRINGXP_009803487.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69861931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-100GRAS family protein