PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00001g04119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 422aa MW: 49341.3 Da PI: 8.3629 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.2 | 1.5e-19 | 26 | 99 | 1 | 77 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwe 77 +fY +YA++ GFsv +s+ ++s+++++i+ ++fvCskeg+r++++ + ++r+r etr gCk ++ ++k+++g w+ Peaxi162Scf00001g04119.1 26 EFYLNYAHRSGFSVHRSRISRSRKDNSIIGQQFVCSKEGFRSKKSLE---SNRQRDETREGCKVMIYLSKKEEGMWM 99 6******************************************9877...9999*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.9E-17 | 26 | 99 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.0E-33 | 217 | 311 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MNVTVDEEPR EPYIGMDFPS PDIAFEFYLN YAHRSGFSVH RSRISRSRKD NSIIGQQFVC 60 SKEGFRSKKS LESNRQRDET REGCKVMIYL SKKEEGMWMQ KFLRSKRKKS EAQKNLIDLL 120 DTSGVRPSKI ASVLINQAGG VENLNLTGRD IQNYLSTKRQ NNLEKGDAQL MLKYFQKHQS 180 ENPGFFYAIQ MDIEGHLANC FWVDARSRVV YKNFGEVVVF DPTYLTNKYM MPFVPFTGVN 240 NHHQSILFGC ALLWDETEEI FVWLLRTWKE AMFGVASRTI ITDQDQAITN AVAKVFPNSA 300 HHFCMWHIEK KIPEYLSHIY HEFGDFKTKF SKCLHDTTTP EEFEIAWKDI MKLYNLEENS 360 WLQRIYAIRE KWIPSYVCTT FCAGMSTTQR SESMNKFFKD YLNSSTPMSV FVTQYDKAVD 420 AR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025886302.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | D5MNY6 | 0.0 | D5MNY6_SOLLC; Transposon-like element Lyt2-2 DNA | ||||
STRING | Solyc01g110070.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-113 | FAR1-related sequence 5 |