PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00001g00599.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 269aa    MW: 30866.4 Da    PI: 5.9517
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00001g00599.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.2e-122873146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                              +g+W +eE e l++ vk++G+++W++I ++  + Rt+k+c+++w +
  Peaxi162Scf00001g00599.1 28 KGPWKAEEGEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLYWVN 73
                              79*************************8887799**********87 PP
2Myb_DNA-binding30.96.4e-1084118339
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                               ++++eE+   +++ +q+G++ W++Ia ++  gRt+++
  Peaxi162Scf00001g00599.1  84 KFSAEEERTVIELQAQFGNK-WARIATHLH-GRTDND 118
                               79******************.*********.****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9782379IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-192576IPR009057Homeodomain-like
SuperFamilySSF466891.48E-2226118IPR009057Homeodomain-like
SMARTSM007172.3E-92777IPR001005SANT/Myb domain
CDDcd001675.32E-103075No hitNo description
PfamPF139214.0E-103181No hitNo description
Gene3DG3DSA:1.10.10.601.7E-1377118IPR009057Homeodomain-like
PROSITE profilePS512949.04280130IPR017930Myb domain
SMARTSM007170.09381128IPR001005SANT/Myb domain
CDDcd001671.04E-684118No hitNo description
PfamPF002492.2E-884118IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEGRRPSSSY HHYRYHFHHE DELGEIKKGP WKAEEGEVLL NHVKKYGPRD WSSIRSKGLL  60
QRTGKSCRLY WVNKLRPNLK NGVKFSAEEE RTVIELQAQF GNKWARIATH LHGRTDNDAP  120
KFSSSADQEE FLSKSQSCSS SYIDNSNMIY LVPLNPNSTD FEANLLQLDF TANEKKLKID  180
SHIQLPFTKL QNDFALPLQT HEFPMPNFID VFGQQLNGSE LDNVQVPFVS TCSGPDRSCF  240
ENPSSPDSFI DDFPLDMFDH IEPLPSQSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-192511724114MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0325371e-116AB032537.2 Nicotiana tabacum B25 mRNA for hypothetical protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312780.11e-118transcription factor MYB24-like
RefseqXP_009587874.11e-118PREDICTED: transcription factor MYB24-like
TrEMBLQ8H0H31e-116Q8H0H3_TOBAC; Uncharacterized protein B25
STRINGXP_009587874.11e-117(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-58MYB family protein